Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_O09
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    27   1.9  
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S...    27   1.9  
SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces ...    27   2.5  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    26   3.3  
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    25   7.7  
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    25   7.7  

>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 176 IRLISDFSNSYIRCCRDASPRHASP 102
           ++++S  SN+Y RC  D S  +  P
Sbjct: 452 LQMVSKLSNTYFRCLHDKSVEYVCP 476


>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
           Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 582

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 215 IKYYEFISNRDYLIRLISDFSNSYIRCCRDASPRHASPRQ 96
           +K++ F+   D+       F++S I CC   SP H    Q
Sbjct: 311 VKFHVFVEQADFTF----GFNDSLISCCTWVSPEHGDIHQ 346


>SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 206 YEFISNRDYLIRLISDFSNSYIRCCRDASPRHASPRQKS 90
           Y+F  N D      S+F    +  C D +P HA+P ++S
Sbjct: 226 YQFSDNFDAYGAPRSEFYPYLLGACDDRNPGHATPPEES 264


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +3

Query: 204  VIFYFIIMTYFTSYHNLFYSAYYFYKIMSMFHICQASRDGSHFLFNLYRYFNVE 365
            V+ Y I+   +  Y N        YK    F++C  S     F+ NL++Y   E
Sbjct: 1129 VLDYIIVQYLYKKYPNATSGELTDYK---SFYVCNKSLSYIGFVLNLHKYIQHE 1179


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 228 TYFTSYHNLFYSAYYFYKIMSMFHICQASR 317
           T +TSY++  YSA  F    S+F I  +SR
Sbjct: 512 TVYTSYYSPSYSARSFTGTGSIFTISSSSR 541


>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -1

Query: 390 PVIIIQLLTLH*NIYTN*IKNVSHHGTPGRCETSTLFCKSNMQN 259
           P  +I  L+L  +   N  +NVS+  +  +CET  L  + N +N
Sbjct: 14  PKKVILSLSLKESSKINDSQNVSNVSSKEKCETEALLREENKEN 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,071,385
Number of Sequences: 5004
Number of extensions: 40195
Number of successful extensions: 103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)