Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_O09
         (564 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0331 + 28519563-28519967                                         27   7.8  
01_06_0330 + 28517378-28518266,28518438-28518550                       27   7.8  

>01_06_0331 + 28519563-28519967
          Length = 134

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -2

Query: 239 SKICHNDKIKYYEFISNR-DYLIRLISDFSNSYIRCCRDASPRHASP 102
           S  C    I Y  ++SN  DY  R    +++  I C RD   R+ +P
Sbjct: 38  SSECGGVNISYPFYLSNATDYYTRFSCGYTDLKISCSRDRDGRNETP 84


>01_06_0330 + 28517378-28518266,28518438-28518550
          Length = 333

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -2

Query: 239 SKICHNDKIKYYEFISNR-DYLIRLISDFSNSYIRCCRDASPRHASP 102
           S  C    I Y  ++SN  DY  R    +++  I C RD   R+ +P
Sbjct: 40  SSECGGVNISYPFYLSNATDYYTRFSCGYTDLKISCSRDRDGRNETP 86


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,537,001
Number of Sequences: 37544
Number of extensions: 200420
Number of successful extensions: 475
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)