Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_O09
         (564 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039050-11|AAC47941.1|  333|Caenorhabditis elegans Seven tm rec...    27   9.3  
AC006685-1|AAK84571.1|  154|Caenorhabditis elegans Hypothetical ...    27   9.3  

>AF039050-11|AAC47941.1|  333|Caenorhabditis elegans Seven tm
           receptor protein 83 protein.
          Length = 333

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = +3

Query: 213 YFIIMTYFTSYHNLFYSAYYFYKIMSMFHICQASRDGSHFLFNLYRYFNV 362
           YF+  T FT Y N+  S        S+F   Q  R  + F   +YRYF+V
Sbjct: 73  YFLFTTQFTQYQNM--SQILIVTFCSIFACMQVVR-AAQF---IYRYFSV 116


>AC006685-1|AAK84571.1|  154|Caenorhabditis elegans Hypothetical
           protein T13G4.2 protein.
          Length = 154

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 218 YHYDIFYFLSQSVLFCILLLQNNVDVSHLP 307
           + YD  YFLS+SV  C+ L  N + +   P
Sbjct: 118 HFYDKIYFLSRSVQKCLQLFSNFLLIHSFP 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,202,588
Number of Sequences: 27780
Number of extensions: 219277
Number of successful extensions: 582
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)