Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_O07
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    29   0.64 
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    29   0.64 
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    28   1.1  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    27   1.5  
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe...    27   2.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   4.5  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    25   6.0  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    25   6.0  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   6.0  
SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator related|Schiz...    25   6.0  

>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 66  MPPSYKERYPEYYKFSKQARHPRDVTWDKNIGNGKV 173
           +PPS+  +YP  Y FS  AR  R V   K+I  G++
Sbjct: 667 VPPSHNGQYPGLYLFSNPARMVRPV---KHISTGEL 699


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -1

Query: 325 LPPKFEVSP--AGPKTLVPYACPSNLPRSSLKNCRVYPALPNNPSSFCPSVPNTFPLP 158
           +P KF ++P  A    + P     +   +S+ +   + A+P  P +F P V N  PLP
Sbjct: 143 VPSKFSLNPSVATSTNISPRRHAKSHSVASVSSPNSHNAVPFTPHAFVPPVNNASPLP 200


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 36/111 (32%), Positives = 46/111 (41%), Gaps = 7/111 (6%)
 Frame = -1

Query: 475 PIVLSDPPADKRVFLSKFH---TPAPLADRFGLPPICLLI--SRAAFAFLLDQSNLPP-K 314
           PIV+ D        LSK     T +PL D    PP+  ++  S +    LLD ++     
Sbjct: 157 PIVIPDDNEQVASPLSKKAASLTSSPLKDFQSSPPLSTVLQKSHSLHDILLDTNDDDHFP 216

Query: 313 FEVSPAGPKTLVPYACPSNLPRSSLKNCRVYPALP-NNPSSFCPSVPNTFP 164
           F  SP         A  S+   S LK C    A P +N  S  PS PN FP
Sbjct: 217 FTQSPLTKTKSFNDALTSS--SSILKPCMPSIASPTSNRLSHAPSTPNLFP 265


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 288 LGPAGDTSNFGGRLDWSNKNANAALDISKQIGGRPNLSASGA 413
           L P G  S FGGR+  +    N A  +S  +    N+++S A
Sbjct: 427 LNPTGRPSRFGGRVRGNPLTMNKAGSVSDLLSTSTNMASSDA 468


>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 24/103 (23%), Positives = 36/103 (34%), Gaps = 2/103 (1%)
 Frame = +3

Query: 186 GQNDDGLFGKAGYTRQFFNDDRGK--LEGQAYGTRVLGPAGDTSNFGGRLDWSNKNANAA 359
           G N    FG  G   Q      G        +G         ++ FGG    +       
Sbjct: 3   GLNKTPSFGSTGTQNQNTGTSAGTGLFSSNTFGNNTQANTPASTGFGGVTGGAFGQTKPQ 62

Query: 360 LDISKQIGGRPNLSASGAGVWNFDKNTRLSAGGSLSTMGRGKP 488
              S   G +PN +++  G+  F +N + + GGSL      KP
Sbjct: 63  TGGSL-FGNKPNATSTTPGLNLFGQNPQAAPGGSLFGASTTKP 104


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = -1

Query: 307  VSPAGPKTLVPYACPSNLPRSSLKNCRVYPALPNNP-SSFCPSVPNTFP 164
            V P  P  +     PS+ P       ++ PA+PN P  S  PSV    P
Sbjct: 1458 VQPKAPGMVTNAPAPSSAPAPPAPVSQLPPAVPNVPVPSMIPSVAQQPP 1506


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -1

Query: 226 VYPALPNNPSS-FCPSVPNTFP 164
           V P +P +PSS F P  P TFP
Sbjct: 306 VSPNIPVSPSSSFVPMYPTTFP 327


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 322 PPKFEVSPAGPKTLVPYACPSNLPRSSLKNCRVYPAL 212
           PP+F  S AG +       PS+L  SS+ + RV P++
Sbjct: 143 PPQFFHSEAGERPTPSVGAPSSL-ASSMDSVRVAPSM 178


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 221  SSFTE*SIVILSECTEYFSVAY 156
            S FTE S  + SEC  YF+  +
Sbjct: 1273 SDFTEDSFTLTSECLRYFNYGH 1294


>SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 265

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
 Frame = -1

Query: 337 DQSNLPPKFEVSPAGPKTLVPYACPSNLPRSSLKNCR-VYPALPNNPSSFCPSVPNTF 167
           +++N+PP     P GP     +      P+   K  R  +P  P+N     P   + F
Sbjct: 207 NRTNIPPGARYDPTGPGDFRGFGRDERKPQFPFKGPRSQFPGEPDNDDFMPPGSSDMF 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,627,683
Number of Sequences: 5004
Number of extensions: 59181
Number of successful extensions: 204
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)