Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_O06
         (437 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.48 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   4.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   4.5  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    21   5.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 0.48
 Identities = 12/19 (63%), Positives = 16/19 (84%), Gaps = 1/19 (5%)
 Frame = +2

Query: 110  LVHLRPPHTP-MSLTATTT 163
            +VH  PPH+P ++LTATTT
Sbjct: 1362 IVHA-PPHSPQITLTATTT 1379


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = -1

Query: 263 HEDLMNGVSNFFQPALKSSDVVGV 192
           ++DL++  +   +P + +SDV+ V
Sbjct: 33  YDDLLSNYNKLVRPVVNTSDVLRV 56


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = -1

Query: 263 HEDLMNGVSNFFQPALKSSDVVGV 192
           ++DL++  +   +P + +SDV+ V
Sbjct: 33  YDDLLSNYNKLVRPVVNTSDVLRV 56


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 96  HVVHSGTDSVEVRNLRNIWHVFSGE 22
           H  H     V+V NLR    V +GE
Sbjct: 39  HCSHCDRQFVQVANLRRHLRVHTGE 63


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,376
Number of Sequences: 438
Number of extensions: 2160
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)