Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_O06
         (437 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g51610.1 68414.m05814 cation efflux family protein / metal to...    29   1.0  
At1g20240.1 68414.m02528 hypothetical protein                          27   4.2  
At3g42940.1 68416.m04509 expressed protein                             27   5.5  
At5g38900.1 68418.m04705 DSBA oxidoreductase family protein cont...    26   9.7  

>At1g51610.1 68414.m05814 cation efflux family protein / metal
           tolerance protein, putative (MTPc4) member of the cation
           diffusion facilitator (CDF) family, or cation efflux
           (CE) family, PMID:11500563
          Length = 457

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +2

Query: 86  WTTCSKIKLVHLRPPHTPMSLTATTTLWAEN*IFSXXXXXXWTSTP-VGRSSIHHSLSPR 262
           +T   ++K + +   H+  ++T  T LW    +FS      WTS+  V  + + HS++  
Sbjct: 97  FTRAKQVKRIEINDQHSQRAVT--TALWCNFLVFSLKFGVWWTSSSHVIMAEVVHSVADF 154

Query: 263 GNPA 274
            N A
Sbjct: 155 ANQA 158


>At1g20240.1 68414.m02528 hypothetical protein
          Length = 566

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = -1

Query: 293 FEKEKLVLGSHEDLMNGVSNFFQPALKSSDVVGVLKRFSFPPRE 162
           ++ + LV+   +D +NGV + +   +KS +V+G  K +S   R+
Sbjct: 481 YDGKHLVVREMKDSLNGVVHVYDMEVKSWEVIGSTKSWSSRVRD 524


>At3g42940.1 68416.m04509 expressed protein
          Length = 193

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 99  EHVVHSGTDSVEVRNLRNIWHVFSGEC 19
           E ++ SG D  ++  + N WH+F   C
Sbjct: 160 EDMLESGFDDKQIYRMHNCWHMFYEGC 186


>At5g38900.1 68418.m04705 DSBA oxidoreductase family protein
           contains Pfam profile: PF01323 DSBA-like thioredoxin
           domain
          Length = 217

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +2

Query: 5   ISVPKHSPLKTCQIFLKFRTSTLSVPEWTTCSKIKLVHLRPPHT 136
           +S P +   +  +   K+  +   VP +T   K+KL   +PP T
Sbjct: 164 LSDPNNGVTEVKEELAKYSKNITGVPNYTINGKVKLSGAQPPET 207


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,736,108
Number of Sequences: 28952
Number of extensions: 176140
Number of successful extensions: 503
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)