Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_O05
(599 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein si... 56 1e-08
At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein si... 50 2e-06
At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein si... 48 6e-06
At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein si... 46 2e-05
At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein si... 45 4e-05
At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein si... 38 0.005
At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein si... 37 0.009
At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein si... 33 0.11
At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein si... 32 0.25
At2g39720.1 68415.m04874 zinc finger (C3HC4-type RING finger) fa... 30 1.3
At2g22650.1 68415.m02684 FAD-dependent oxidoreductase family pro... 30 1.3
At1g65850.1 68414.m07472 disease resistance protein (TIR-NBS-LRR... 29 1.8
At4g18010.2 68417.m02680 inositol polyphosphate 5-phosphatase II... 29 2.4
At1g23270.1 68414.m02911 hypothetical protein 29 2.4
At5g35840.1 68418.m04306 phytochrome C (PHYC) identical to SP|P1... 28 4.1
At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger) fa... 28 4.1
At3g26920.1 68416.m03368 F-box family protein contains F-box dom... 28 4.1
At2g18650.1 68415.m02173 zinc finger (C3HC4-type RING finger) fa... 28 4.1
At1g65780.1 68414.m07465 tRNA-splicing endonuclease positive eff... 28 4.1
At4g37110.1 68417.m05256 expressed protein 28 5.4
At4g15075.1 68417.m02316 hypothetical protein 28 5.4
At1g13540.1 68414.m01587 expressed protein 28 5.4
At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger) fa... 27 7.2
At3g27220.1 68416.m03403 kelch repeat-containing protein contain... 27 7.2
At2g46160.1 68415.m05740 zinc finger (C3HC4-type RING finger) fa... 27 7.2
At5g42870.1 68418.m05225 lipin family protein contains Pfam prof... 23 7.6
At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein ... 27 9.5
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 27 9.5
>At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 398
Score = 56.4 bits (130), Expect = 1e-08
Identities = 31/114 (27%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Frame = +2
Query: 191 TDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITN-LKRQFPQLRVF 367
TD++ +L THL A ++A++Y++ N A + A T ++++ P ++
Sbjct: 21 TDIDSSLF--THLFCTFADLEAESYEITIATWN------QAPFHAFTETVQQRNPHVKTL 72
Query: 368 LTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLPKRK 529
L++GG + +D + + +P +R +F S + +A YGF G+DL W+ P+ +
Sbjct: 73 LSIGGGNADKDA--FASMASNPDSRASFIQSTITVARSYGFHGLDLDWEYPRNE 124
>At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 379
Score = 49.6 bits (113), Expect = 2e-06
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Frame = +2
Query: 191 TDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITN-LKRQFPQLRVF 367
TD++ +L THL A + + T ++ + N + T ++R+ P ++
Sbjct: 42 TDIDSSLF--THLFCAFADLNSQTNQVTVSSAN------QPKFSTFTQTVQRRNPSVKTL 93
Query: 368 LTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 520
L++GG D Y + +P +R +F +S++ +A YGF G+DL W+ P
Sbjct: 94 LSIGGG--IADKTAYASMASNPTSRKSFIDSSIRVARSYGFHGLDLDWEYP 142
>At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 363
Score = 47.6 bits (108), Expect = 6e-06
Identities = 29/101 (28%), Positives = 52/101 (51%)
Frame = +2
Query: 221 THLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITNLKRQFPQLRVFLTVGGDDDTED 400
THL A + T +V + ++ +N+ I +K++ P ++ L++GG + D
Sbjct: 39 THLFCAFADLDPQTNSVVVSGAH---EQEFSNFTKI--VKKKNPHVQTLLSIGGRN--AD 91
Query: 401 PQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLPK 523
+ + +P +R +F SA+ A Y FDG+DL W+ PK
Sbjct: 92 KSAFASMASNPTSRKSFIWSAISSARYYRFDGLDLVWKYPK 132
>At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 366
Score = 46.0 bits (104), Expect = 2e-05
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Frame = +2
Query: 212 SFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITN-LKRQFPQLRVFLTVGGDD 388
S THL A I TY+++ + N + T ++R+ P ++ L++GGD
Sbjct: 45 SLFTHLFCAFADINTLTYQVIVSSRN------KPKFSTFTQTVRRRNPTVKTLLSIGGDF 98
Query: 389 DTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 520
+ + +P +R F +S++ LA GF G+DL+W+ P
Sbjct: 99 TYNFA--FASMASNPTSRKLFISSSIKLARSCGFHGLDLNWKYP 140
>At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 332
Score = 44.8 bits (101), Expect = 4e-05
Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 2/139 (1%)
Frame = +2
Query: 110 SPSSQSKVLCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNEN 289
SPS++ K ++ E+Q + + P+ F THL A + A+++K+
Sbjct: 9 SPSAEVKASYWFPDG----ETQDPITSAETIPSALF-THLFCAFADLDANSHKVF----- 58
Query: 290 LDIDRAHAN-YRAITN-LKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSA 463
+ +AH + T +K + PQ++ L++GG + + + + Q+R F +S
Sbjct: 59 --VSQAHEFIFSTFTETVKIRNPQVKTLLSIGGKNANNSA--FASMASNHQSRKTFIDSW 114
Query: 464 LLLAEQYGFDGIDLSWQLP 520
+ +A GF G+DL+W+ P
Sbjct: 115 IFIARSNGFHGLDLAWEYP 133
>At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 261
Score = 37.9 bits (84), Expect = 0.005
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 419 LLESPQARTAFTNSALLLAEQYGFDGIDLSWQLPK 523
+ S R +F S + +A YGFDG+DL W+ P+
Sbjct: 1 MASSSYGRKSFILSTISIARSYGFDGLDLDWEYPR 35
>At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 365
Score = 37.1 bits (82), Expect = 0.009
Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 1/126 (0%)
Frame = +2
Query: 146 DSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRA 325
D KS E ++ P+ + F THL A + + T+++ N + +
Sbjct: 22 DGKSQSPECLSQGTPSSFIDSTLF-THLFCAFADVDSSTHEVTISAAN------SYQFSS 74
Query: 326 ITN-LKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGID 502
T +K + ++ L++GG D D + + + R AF +S++ +A + F G+D
Sbjct: 75 FTETVKEKNTDVQTLLSIGGKD--ADKAVLASMASNSKNRKAFIDSSIDIARKKDFYGLD 132
Query: 503 LSWQLP 520
L+W+ P
Sbjct: 133 LAWEYP 138
>At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 362
Score = 33.5 bits (73), Expect = 0.11
Identities = 17/62 (27%), Positives = 34/62 (54%)
Frame = +2
Query: 335 LKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQ 514
+K + ++ L++GG D D + + + R AF +S++ +A + F G+DL+W+
Sbjct: 71 VKDKNTDVQTLLSIGGKD--ADKAVLASMASNSKNRKAFIDSSIDIARKKDFYGLDLAWE 128
Query: 515 LP 520
P
Sbjct: 129 YP 130
>At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 289
Score = 32.3 bits (70), Expect = 0.25
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +2
Query: 419 LLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 520
++ + +R +F +S++ +A GF G+DL+W+ P
Sbjct: 79 IVSNRTSRESFISSSISIARSLGFYGLDLAWEYP 112
>At2g39720.1 68415.m04874 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 401
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +3
Query: 108 HHLVAKAKSSATMTARAISEN-LKHVCCLRTWSLLFRSAPICCTNLPASKLT 260
H V K +AR + N + H C+ W + S P+C LPA LT
Sbjct: 200 HCAVCKENFVLKSSAREMPCNHIYHPDCILPWLAIRNSCPVCRHELPAEDLT 251
>At2g22650.1 68415.m02684 FAD-dependent oxidoreductase family
protein
Length = 420
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 485 GFDGIDLSWQLPKRKPKKIRSSI 553
GF GI ++W L K PK++R S+
Sbjct: 30 GFAGISVAWHLLKESPKELRLSV 52
>At1g65850.1 68414.m07472 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1036
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 213 RSAPICCTNLPASKLTHIKWFHSM 284
RS PIC T P+S +H KW H +
Sbjct: 13 RSCPICATPFPSSSSSH-KWTHQV 35
>At4g18010.2 68417.m02680 inositol polyphosphate 5-phosphatase II
(IP5PII) nearly identical to inositol polyphosphate
5-phosphatase II [Arabidopsis thaliana] GI:10444263
isoform contains an AT-acceptor splice site at intron 6
Length = 613
Score = 29.1 bits (62), Expect = 2.4
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 9/140 (6%)
Frame = +2
Query: 164 RESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITNLKR 343
R A P + A S +H++ ++ + AD ++ NE +D A + N
Sbjct: 201 RSHSAPSSPILAQEANSIISHVMVEN--LVADHSLDLATNEFIDAATALPSLEPQRNPNM 258
Query: 344 QFPQLRVFLT---VGGDDDTEDPQKYNLLL-----ESPQARTAFTNSALLLAEQYGFDGI 499
+P+L + VG + N L E+P + F + A L F+ +
Sbjct: 259 DWPELALDSNPQIVGSEGKLRRVFSSNATLGFKLPENPSGASRFASEARQLKRSRSFETL 318
Query: 500 DLSW-QLPKRKPKKIRSSIG 556
+LSW + + KIR+S G
Sbjct: 319 NLSWNDIKEEDGDKIRNSYG 338
>At1g23270.1 68414.m02911 hypothetical protein
Length = 180
Score = 29.1 bits (62), Expect = 2.4
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 1/124 (0%)
Frame = -3
Query: 552 ILERIFFGFLFGNCQDRSIPSKPYCSARRRAEL-VKAVRACGDSNKRLYFCGSSVSSSPP 376
+LE++ G D ++P+ P RR L V + S K+L +S++S P
Sbjct: 25 VLEQVAKINCSGFTDDTALPTNPETRLRRLKSLPVSRTDSVSSSPKKLLSHSNSMASHPE 84
Query: 375 TVKNTRN*GNCLFKFVIAR*LACARSMSKFSLSETILYVSAWMPADLYSRWVQNERAGSK 196
K R + + F I +C S + ET ++ + SR E +GSK
Sbjct: 85 --KKYRGNVSSVSSFSIQVGKSCPLDSS---VEETQIFSKTKRNQSVKSRGGLGESSGSK 139
Query: 195 SVGS 184
+GS
Sbjct: 140 RIGS 143
>At5g35840.1 68418.m04306 phytochrome C (PHYC) identical to SP|P14714
Phytochrome C {Arabidopsis thaliana}
Length = 1111
Score = 28.3 bits (60), Expect = 4.1
Identities = 24/89 (26%), Positives = 38/89 (42%)
Frame = -3
Query: 453 VKAVRACGDSNKRLYFCGSSVSSSPPTVKNTRN*GNCLFKFVIAR*LACARSMSKFSLSE 274
V ++R GD+ + ++ SS R G C+ VIAR A + M + L
Sbjct: 987 VSSMRLYGDNLRLQQILSETLLSSIRFTPALR--GLCVSFKVIARIEAIGKRMKRVELEF 1044
Query: 273 TILYVSAWMPADLYSRWVQNERAGSKSVG 187
I++ + +P DL Q R G+ G
Sbjct: 1045 RIIHPAPGLPEDLVREMFQPLRKGTSREG 1073
>At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 525
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 188 PTDLEPALSFCTHLLYKSAG 247
PTD P+LSFC +Y S G
Sbjct: 321 PTDPNPSLSFCPSNIYSSTG 340
>At3g26920.1 68416.m03368 F-box family protein contains F-box domain
Pfam:PF00646
Length = 565
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 576 LMLCQKDPILERIFFGFLFGNCQ 508
L+L K P LE + GF FG C+
Sbjct: 336 LLLSNKAPFLESLHLGFRFGECR 358
>At2g18650.1 68415.m02173 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 finger protein RHX1a
[Arabidopsis thaliana] GI:3790591; contains Pfam profile
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 423
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 177 HVCCLRTWSLLFRSAPICCTNLPASKLTH 263
HV C+ TW L + P+C +NL + +H
Sbjct: 150 HVECIDTWLLSHSTCPLCRSNLLSGFSSH 178
>At1g65780.1 68414.m07465 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 1065
Score = 28.3 bits (60), Expect = 4.1
Identities = 23/86 (26%), Positives = 38/86 (44%)
Frame = +2
Query: 227 LLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQ 406
LL+ +A A Y + + L ID A +++ Q P LR + VG +
Sbjct: 547 LLFSTASCSARLYTGTPI-QLLVIDEAAQLKECESSIPMQLPGLRHLILVGDERQLPAMV 605
Query: 407 KYNLLLESPQARTAFTNSALLLAEQY 484
+ + LE+ R+ F ALL ++Y
Sbjct: 606 ESQIALEAGFGRSLFERLALLGHKKY 631
>At4g37110.1 68417.m05256 expressed protein
Length = 417
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -1
Query: 272 PFYMCQLGCRQICTADGCRTKEQAPSP*AAY-VLEIL*YSSCCH 144
P ++C + CR IC CRTK+ AAY + L Y S H
Sbjct: 228 PDWICPV-CRDICNCSFCRTKKGWLPTGAAYRKIHKLGYKSVAH 270
>At4g15075.1 68417.m02316 hypothetical protein
Length = 168
Score = 27.9 bits (59), Expect = 5.4
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +3
Query: 171 LKHVCCLRTWSLLFRSAP 224
L++ CCL+T ++LF+S P
Sbjct: 126 LRNACCLKTATILFKSTP 143
>At1g13540.1 68414.m01587 expressed protein
Length = 381
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 353 QLRVFLTVGGDDDTEDPQKYNLLLESPQARTAF 451
+L V +GGDD T DP + +L+ P + +
Sbjct: 65 KLAVTFNIGGDDSTRDPVVFIPVLDKPLSSNCY 97
>At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 396
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 177 HVCCLRTWSLLFRSAPICCTNLPAS 251
HV C+ W L S P+C LP+S
Sbjct: 282 HVRCIVPWLELHSSCPVCRFELPSS 306
>At3g27220.1 68416.m03403 kelch repeat-containing protein contains
Pfam PF01344: Kelch motif (4 repeats); contains Prosite
PS00334: Myb DNA-binding domain repeat signature 2;
similar to Male enhanced Antigen-1 (peas) (GI:20513270)
[Mus musculus]
Length = 426
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = +2
Query: 452 TNSALLLAEQYGFDGIDLSWQLPKRKPKKIRSSIGSFWH 568
T +L+ E + F L+W + R P ++++++ FW+
Sbjct: 355 TKRLVLVGEIFRFQLDTLTWSVIGRLPYRVKTAMAGFWN 393
>At2g46160.1 68415.m05740 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 zinc finger protein
ATL6 [Arabidopsis thaliana] GI:4928403; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 214
Score = 27.5 bits (58), Expect = 7.2
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 177 HVCCLRTWSLLFRSAPIC 230
H+CCL W L S P+C
Sbjct: 162 HLCCLDAWLKLNGSCPVC 179
>At5g42870.1 68418.m05225 lipin family protein contains Pfam
profile: PF04571 lipin, N-terminal conserved region
Length = 930
Score = 23.0 bits (47), Expect(2) = 7.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 209 LSFCTHLLYKSAGIQADTYKMVSLNENLDIDR 304
LS C HLL S G+ A+ +E LD+++
Sbjct: 542 LSLCKHLL--SEGMGAEAASQAFNSEKLDMEK 571
Score = 22.6 bits (46), Expect(2) = 7.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 104 PASPSSQSKVLCYYDSKSYIRESQARMLPTDLE 202
P+ P SQS C+ SK +RE ++ D E
Sbjct: 486 PSQPLSQSFDPCFNTSKLDLREDESSSGGLDAE 518
>At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 381
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 405 CGSSVSSSPPTVKNTRN*GNCLF 337
CG S SSSP +V + +N CLF
Sbjct: 177 CGGSPSSSPASVLSNKNNRCCLF 199
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +3
Query: 57 SPSPGYWR*RLRLPTTQHHLV-AKAKSSATMTARAISENLKHVCCLRTWSLLFRSAPICC 233
SP+ G W + ++P+ H L+ S T+ ARA ++ + LL + C
Sbjct: 578 SPAAGMWFSKFKIPSPGHILIYGPPGSGKTILARAAAKYFE-----EQKDLLAHVILVSC 632
Query: 234 TNLPASKLTHI 266
+ L K+ HI
Sbjct: 633 STLALEKVQHI 643
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,098,602
Number of Sequences: 28952
Number of extensions: 233721
Number of successful extensions: 725
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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