Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_O04
         (491 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35292| Best HMM Match : AFG1_ATPase (HMM E-Value=6.8)               32   0.30 
SB_30271| Best HMM Match : CM_2 (HMM E-Value=9.5)                      28   3.6  
SB_22889| Best HMM Match : Adeno_VII (HMM E-Value=2.3)                 28   3.6  
SB_14689| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_11386| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_712| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   8.4  
SB_35734| Best HMM Match : Extensin_2 (HMM E-Value=0.52)               27   8.4  
SB_14261| Best HMM Match : ig (HMM E-Value=0)                          27   8.4  
SB_3221| Best HMM Match : rve (HMM E-Value=3)                          27   8.4  

>SB_35292| Best HMM Match : AFG1_ATPase (HMM E-Value=6.8)
          Length = 305

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 239 SQEEITNLLGGAKYISPVNKYSSLSRQFSGMNPDFFTMANKMYVG 373
           S+  + N++ G K   P+  Y +LS    G +PD F      Y+G
Sbjct: 187 SEHSLVNVVNGVKAKGPLASYVALSMTTIGASPDLFVTEGLEYLG 231


>SB_30271| Best HMM Match : CM_2 (HMM E-Value=9.5)
          Length = 665

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 174 WCRLHWVRCSYCPSTEKEPVNKAKKRSPISW 266
           WC L   RCS   + +    N+ + R P+SW
Sbjct: 73  WCYLILPRCSIQITPDGTATNQGRVRDPLSW 103


>SB_22889| Best HMM Match : Adeno_VII (HMM E-Value=2.3)
          Length = 347

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 174 WCRLHWVRCSYCPSTEKEPVNKAKKRSPISW 266
           WC L   RCS   + +    N+ + R P+SW
Sbjct: 73  WCYLILPRCSIQITPDGTATNQGRVRDPLSW 103


>SB_14689| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1900

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -1

Query: 227 LLLCRGTVRTSHPMETTPHSCLHRMYTLP*GVSGRLCRWHRLGLSVHNRARKY 69
           +LLC+G  + S P E T  S + + +++  G S  LCR  +  L       KY
Sbjct: 142 VLLCKGNPKKSEPEEFTRDSQVLQGHSVILGGSSVLCRRSKRSLPQLGAPAKY 194


>SB_11386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 101

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +2

Query: 302 SSLSRQFSGMNPDFFTMANKMYVGNQYTLNEWFTITARQYESEIDTID 445
           S+L+R+    NPD F  A + +   +  L EW T  +R+   E D++D
Sbjct: 40  STLARRSDPANPDTFENAVERFQTFESVLLEW-TAGSRRTRCENDSVD 86


>SB_712| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/50 (22%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +2

Query: 275 KYISPVNKYSSLSRQFSGMNPDFFTMANKMYVGNQYTL-NEWFTITARQY 421
           KY +   +Y ++  Q+  + P +FT+  + + G  +T+  ++FT+  + +
Sbjct: 77  KYFTIPPQYFTVPPQYFTVPPQYFTVPPQYFTGQYFTIPPQYFTVPPQYF 126


>SB_35734| Best HMM Match : Extensin_2 (HMM E-Value=0.52)
          Length = 460

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = +3

Query: 111 PSTKPP*NSLRKRIHPVKTRMWCRLHWVRCSYCPSTEKEPVNKAKKRSP 257
           P+ +PP + LR    P++     RL + +    P+   +PV +     P
Sbjct: 187 PAIRPPNSDLRANCGPMENDTTTRLDYTKKQILPAQSAKPVYRRPSTGP 235


>SB_14261| Best HMM Match : ig (HMM E-Value=0)
          Length = 1337

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 258 ISWVVQNIYRLSTSTAA*VGSFR 326
           I WV QN+ +L+ ST    GS+R
Sbjct: 734 IDWVYQNVSKLALSTREDTGSYR 756


>SB_3221| Best HMM Match : rve (HMM E-Value=3)
          Length = 324

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 26/130 (20%), Positives = 52/130 (40%), Gaps = 5/130 (3%)
 Frame = +2

Query: 44  VVCSVQAFHIF-----GRDYERTALGDAIDKASLKLLKEAYTSGEDKNVVSSPLGAMFLL 208
           +VC + +F  F        Y     GD    A++KL+K++ +  +  + +        + 
Sbjct: 3   LVCFIPSFDTFPTYDLASFYSVLCSGDE-QLATIKLMKKSPSLFQKSHTLKPRANCASIA 61

Query: 209 SLYREGAGKQSQEEITNLLGGAKYISPVNKYSSLSRQFSGMNPDFFTMANKMYVGNQYTL 388
           S   E   +Q    +  +L GA+   P+   S   + ++ +  D F +  K Y+      
Sbjct: 62  S---ETLAQQCWRSLNTVLEGARAGEPLMAMSFPEKPWTRLGTDLFELDRKTYIIVVDYT 118

Query: 389 NEWFTITARQ 418
           + WF +   Q
Sbjct: 119 SRWFEVKELQ 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,864,765
Number of Sequences: 59808
Number of extensions: 382755
Number of successful extensions: 1100
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)