Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_O03
         (470 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    29   0.47 
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    26   2.5  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   3.3  
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce...    25   7.7  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    25   7.7  

>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 28.7 bits (61), Expect = 0.47
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 298 LSFSQ*NSHGFSYVLPSDPQTGL*IFPQIHNGGGRAVT 185
           L++ Q +++G SYVL +DP      F +  NG  R  T
Sbjct: 289 LAYEQADANGISYVLATDPDADRFAFAEKINGAWRRFT 326


>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 299 DTQQYDNREKHRMRGGHPLATVPWNM-PPSVALTEKLTPTNVHWNA 433
           D   Y NR   +MRG  PL  V  ++ P ++    K+  + +H  A
Sbjct: 94  DNPYYKNRPPQKMRGNKPLLPVKESVNPKNLPSISKVVVSTMHKEA 139


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 350  PLATVPWNMPPSVALTEKLTPTN 418
            PL+++P N PPSVA   KL P +
Sbjct: 1936 PLSSMP-NAPPSVASNAKLPPAS 1957


>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 498

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +2

Query: 353 LATVPWNMPPSVALTEKLTPTNVHWNAP 436
           +  V W MP  + +       N+HW AP
Sbjct: 371 MMAVGWLMPAGIFVFAWTNSPNIHWIAP 398


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +1

Query: 331 PHARWASPCYCTLEYAPVC 387
           P+  WA P +   EY  +C
Sbjct: 633 PYGNWARPLFLVFEYILIC 651


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,791,330
Number of Sequences: 5004
Number of extensions: 38462
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)