Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_O03
         (470 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0379 + 43177978-43178572,43178643-43178674                       34   0.067
09_02_0133 + 4707944-4708308,4708320-4708534,4708626-4708672,470...    29   2.5  
03_05_0936 - 28955486-28955683,28956320-28956424,28956550-289566...    29   2.5  
07_03_1409 + 26359581-26360561                                         28   3.3  
04_04_0303 + 24269467-24270741                                         28   4.4  
12_01_0415 + 3292576-3293727                                           27   5.8  
04_03_0862 + 20389903-20390247,20392408-20392483,20392924-20392979     27   7.6  
03_02_0531 - 9240635-9240957,9241742-9241865,9241961-9242103,924...    27   7.6  

>01_07_0379 + 43177978-43178572,43178643-43178674
          Length = 208

 Score = 33.9 bits (74), Expect = 0.067
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 318 LSYCCVSCPFRSKIH-TGSRTSYHLTRRRDYRFFRKYITA 202
           L Y C  C FR+    T S+T +HL  R +YR++  Y+ A
Sbjct: 157 LFYSCACCAFRNTATATSSKTIFHLHPRWEYRWYLLYLCA 196


>09_02_0133 +
           4707944-4708308,4708320-4708534,4708626-4708672,
           4708997-4709393,4710042-4710608,4710708-4710838,
           4711274-4711747
          Length = 731

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
 Frame = +2

Query: 173 ANILGNSSATAVMYLRKNL*SRL-RVRW*DVREPV*ILLRKGQDTQQYDNREKHRMRGGH 349
           +++L + +AT    L++   SRL RV W  +R      L  G   Q   N    +    H
Sbjct: 16  SSMLSSPAATPSGRLQEKACSRLARVSWMTLRPR----LYPGHICQPEPNGSSSK---SH 68

Query: 350 PLATVPWNMPPSVALTEKLTPTNVHWNAP 436
           PL ++P  M   + L   +TP    +N P
Sbjct: 69  PLTSIPLPMNYKIELNTNVTPDQRRYNVP 97


>03_05_0936 -
           28955486-28955683,28956320-28956424,28956550-28956693,
           28957078-28957356,28957480-28957587,28958288-28958567,
           28958724-28960029,28961301-28962342
          Length = 1153

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 255 YHLTRRRDYRFFRKYITAVAELLPSIL 175
           YHL R  DY ++R+++  V ELL + L
Sbjct: 864 YHLLRLYDYFYYREHLLIVCELLKANL 890


>07_03_1409 + 26359581-26360561
          Length = 326

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +2

Query: 293 GQDTQQYDNREKHRMRGGHPLATVPWNMPPSVALTEKLTPTNVHWNAPKRL 445
           G+       R++ R RGG   AT P   P +  + + + P  V  + P ++
Sbjct: 160 GEVKSPTSGRQRRRRRGGDFAATAPAAAPATTNMVQPIQPVQVPVSVPVKM 210


>04_04_0303 + 24269467-24270741
          Length = 424

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 340 RWASPCY-CTLEYAPVCGSHGKTYANKCSLECTQKIIPSLKMEH 468
           +W+   Y C +  +P+  SHGK Y       C +K+   L+++H
Sbjct: 229 QWSLSTYECVILSSPIA-SHGKIYLMHTDRSCGEKMHQILRIDH 271


>12_01_0415 + 3292576-3293727
          Length = 383

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 205 GGGRAVTEYISAAAIRRIPSLFILC 131
           GGG    E +S A IRR+   FILC
Sbjct: 38  GGGGGGEEILSVAWIRRLLEAFILC 62


>04_03_0862 + 20389903-20390247,20392408-20392483,20392924-20392979
          Length = 158

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = -3

Query: 366 GTVARGCPPRMRCFSRLSYCCVSCPFRSKIHTGSRTSYHLTRRRD 232
           G  A    P +  + RL  CC++    S +  G     H  +RRD
Sbjct: 53  GASAASESPPLHLYQRLPKCCITSHRCSTLRAGYPADLHGQKRRD 97


>03_02_0531 -
           9240635-9240957,9241742-9241865,9241961-9242103,
           9242205-9242340,9242468-9242796,9243236-9243305
          Length = 374

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +2

Query: 323 EKHRMRGGHPLATVPWNMPPSVALTEKLTPTNVHWNAPKRLYR 451
           E H  R G     +PWN+   VAL        +H +  K +YR
Sbjct: 173 EHHLFRRGSHFQPLPWNLRMKVALEAARGLAFLHSDQAKVIYR 215


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,083,362
Number of Sequences: 37544
Number of extensions: 269177
Number of successful extensions: 772
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)