Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_O03
(470 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr... 44 7e-05
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p... 42 2e-04
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 42 2e-04
U40954-1|ABA00179.1| 251|Caenorhabditis elegans Hypothetical pr... 33 0.078
U39993-3|AAK72060.1| 728|Caenorhabditis elegans Hypothetical pr... 31 0.32
U40415-5|AAK39251.1| 655|Caenorhabditis elegans Hypothetical pr... 30 0.96
U39993-2|AAK72059.1| 744|Caenorhabditis elegans Hypothetical pr... 29 1.7
AL032660-2|CAA21751.1| 690|Caenorhabditis elegans Hypothetical ... 29 1.7
>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
protein F29G6.1 protein.
Length = 1170
Score = 43.6 bits (98), Expect = 7e-05
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +3
Query: 198 PPPLCICGKIYSPVCGSDGKTYENPCEFYCEKDKTHSNMTIVKNTAC 338
PPP C C + PVCG+D TY N C C + +T+ ++ N C
Sbjct: 15 PPPDCDCPSVIRPVCGTDNVTYNNLCFLRCVQ-RTNEDLLFFYNGTC 60
Score = 33.5 bits (73), Expect = 0.078
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1
Query: 355 CYCTLEYAPVCGSHGKTYANKCSLECTQK 441
C C PVCG+ TY N C L C Q+
Sbjct: 19 CDCPSVIRPVCGTDNVTYNNLCFLRCVQR 47
Score = 33.5 bits (73), Expect = 0.078
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +3
Query: 207 LCICGKIYSPVCGSDGKTYENPCEFY---CEKDKTHSNMT 317
L C K PVC S G+T+++ C F+ C DK H+ T
Sbjct: 1070 LASCPKTGQPVCDSRGRTHDSLCHFHNSKCIFDKIHTQNT 1109
Score = 33.1 bits (72), Expect = 0.10
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 361 CTLEYAPVCGSHGKTYANKCSLE 429
C EY+PVC S+G+ N+C L+
Sbjct: 872 CPKEYSPVCASNGQNIVNECELD 894
Score = 32.7 bits (71), Expect = 0.14
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 361 CTLEYAPVCGSHGKTYANKCSLE 429
C Y P+CG++G T+ N CSL+
Sbjct: 772 CDNSYDPLCGTNGVTFTNACSLQ 794
Score = 32.3 bits (70), Expect = 0.18
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = +3
Query: 216 CGKIYSPVCGSDGKTYENPCEF---YCEKDKTHSN-MTIVKNTAC 338
C +SPVC S G T++N C F C ++T + +TI K C
Sbjct: 818 CPSDFSPVCDSKGSTHQNICHFGVKRCIAERTFGDVLTIDKFEVC 862
Score = 31.9 bits (69), Expect = 0.24
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 216 CGKIYSPVCGSDGKTYENPCEFYCEKDKTHSNMT 317
C K YSPVC S+G+ N CE + +N+T
Sbjct: 872 CPKEYSPVCASNGQNIVNECELDKIRCLVENNVT 905
Score = 30.3 bits (65), Expect = 0.73
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 234 PVCGSDGKTYENPCEFYCEK 293
P+C SD TYEN C+F +K
Sbjct: 596 PICASDFSTYENLCQFRKQK 615
Score = 30.3 bits (65), Expect = 0.73
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +3
Query: 216 CGKIYSPVCGSDGKTYENPCEFYCEKDKTHSNMTIVKNT--ACEVGIP 353
C Y P+CG++G T+ N C E ++ ++ V T C+ P
Sbjct: 772 CDNSYDPLCGTNGVTFTNACSLQKEICESANSTIEVAYTGMCCDTNCP 819
Score = 29.1 bits (62), Expect = 1.7
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 216 CGKIYSPVCGSDGKTYENPCEF 281
C K + PVC + +T++N C+F
Sbjct: 257 CDKSWDPVCDTRNRTHKNVCQF 278
Score = 28.3 bits (60), Expect = 2.9
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 216 CGKIYSPVCGSDGKTYENPCEF 281
C K+ +P+C + G+T+ N C F
Sbjct: 66 CEKVGTPICDNFGETHINDCHF 87
Score = 27.5 bits (58), Expect = 5.1
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 361 CTLEYAPVCGSHGKTYANKC 420
C +++PVC S G T+ N C
Sbjct: 818 CPSDFSPVCDSKGSTHQNIC 837
>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
protein F41G3.12 protein.
Length = 1483
Score = 42.3 bits (95), Expect = 2e-04
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +3
Query: 204 PLCICGKI---YSPVCGSDGKTYENPCEFYCEKDKTHSNMTIVKNTACE 341
P C+C + VCGSDGKTY N C N+ + N+ACE
Sbjct: 461 PKCVCPSCTDEFKEVCGSDGKTYSNECRLQNAACMAQKNIFVKYNSACE 509
Score = 37.5 bits (83), Expect = 0.005
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +1
Query: 361 CTLEYAPVCGSHGKTYANKCSLE 429
CT E+ VCGS GKTY+N+C L+
Sbjct: 468 CTDEFKEVCGSDGKTYSNECRLQ 490
Score = 37.1 bits (82), Expect = 0.006
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +3
Query: 216 CGKIYSPVCGSDGKTYENPCEFYCEKDKTHSNMTIVKNTACEVGI 350
C + PVC ++G+T++N CE + +T S + + C +G+
Sbjct: 397 CEDVMRPVCATNGETFDNECEMKKKSCETKSMIKVKHQGTCGIGV 441
Score = 34.7 bits (76), Expect = 0.034
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +1
Query: 361 CTLEYAPVCGSHGKTYANKCSLE 429
CT+ A VCG+ GKTY N+C L+
Sbjct: 323 CTMNSAHVCGTDGKTYLNECFLK 345
Score = 31.9 bits (69), Expect = 0.24
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +3
Query: 237 VCGSDGKTYENPCEFYCEKDKTHSNMTIVKNTAC-EVGIP 353
VCG+DGKTY N C K ++ + K C E G P
Sbjct: 330 VCGTDGKTYLNECFLKLAACKEQKDILVWKRGNCDEAGSP 369
Score = 30.3 bits (65), Expect = 0.73
Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
Frame = +1
Query: 193 LCHRRYVFAEKSIVPSAGQMVRRTRTRVNFTAKRTRHTAI*QS*KTPHARWASPC-YCTL 369
LCH + +K S ++ +F + R T H WA C C L
Sbjct: 630 LCHLQLASCQKGAPISEMPPSHCHSSKTSFPDFKVRRPCACYFGATCH-NWACTCPTCNL 688
Query: 370 EYA-PVCGSHGKTYANKCSL 426
P+CGS G Y N+C L
Sbjct: 689 SSNYPICGSDGIVYNNQCHL 708
Score = 29.5 bits (63), Expect = 1.3
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 204 PLCICGKIYSPVCGSDGKTYENPC 275
P C Y P+CGSDG Y N C
Sbjct: 684 PTCNLSSNY-PICGSDGIVYNNQC 706
Score = 29.5 bits (63), Expect = 1.3
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +3
Query: 237 VCGSDGKTYENPCE 278
VCGSDG TY N CE
Sbjct: 880 VCGSDGTTYSNLCE 893
Score = 28.3 bits (60), Expect = 2.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 364 TLEYAPVCGSHGKTYANKCSL 426
++E +PVC SHG Y + C L
Sbjct: 254 SVESSPVCSSHGVDYQSSCHL 274
Score = 27.5 bits (58), Expect = 5.1
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 382 VCGSHGKTYANKCSLE 429
VCGS G TY+N C L+
Sbjct: 880 VCGSDGTTYSNLCELK 895
Score = 26.6 bits (56), Expect = 9.0
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 231 SPVCGSDGKTYENPCEFYCEKDKTHSNMTI 320
SPVC S G Y++ C ++ +N+T+
Sbjct: 258 SPVCSSHGVDYQSSCHLRHHACESKTNITV 287
Score = 26.6 bits (56), Expect = 9.0
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +1
Query: 352 PCYCTLEYAPVCGSHGKTYANKCSLE 429
P C PVC ++G+T+ N+C ++
Sbjct: 394 PNRCEDVMRPVCATNGETFDNECEMK 419
>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
protein) homologfamily member protein.
Length = 1473
Score = 42.3 bits (95), Expect = 2e-04
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +3
Query: 204 PLCICGKI---YSPVCGSDGKTYENPCEFYCEKDKTHSNMTIVKNTACE 341
P C+C + VCGSDGKTY N C N+ + N+ACE
Sbjct: 469 PKCVCPSCTDEFKEVCGSDGKTYSNECRLQNAACMAQKNIFVKYNSACE 517
Score = 37.5 bits (83), Expect = 0.005
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +1
Query: 361 CTLEYAPVCGSHGKTYANKCSLE 429
CT E+ VCGS GKTY+N+C L+
Sbjct: 476 CTDEFKEVCGSDGKTYSNECRLQ 498
Score = 37.1 bits (82), Expect = 0.006
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +3
Query: 216 CGKIYSPVCGSDGKTYENPCEFYCEKDKTHSNMTIVKNTACEVGI 350
C + PVC ++G+T++N CE + +T S + + C +G+
Sbjct: 405 CEDVMRPVCATNGETFDNECEMKKKSCETKSMIKVKHQGTCGIGV 449
Score = 34.7 bits (76), Expect = 0.034
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +1
Query: 361 CTLEYAPVCGSHGKTYANKCSLE 429
CT+ A VCG+ GKTY N+C L+
Sbjct: 331 CTMNSAHVCGTDGKTYLNECFLK 353
Score = 31.9 bits (69), Expect = 0.24
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +3
Query: 237 VCGSDGKTYENPCEFYCEKDKTHSNMTIVKNTAC-EVGIP 353
VCG+DGKTY N C K ++ + K C E G P
Sbjct: 338 VCGTDGKTYLNECFLKLAACKEQKDILVWKRGNCDEAGSP 377
Score = 29.5 bits (63), Expect = 1.3
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +3
Query: 237 VCGSDGKTYENPCE 278
VCGSDG TY N CE
Sbjct: 819 VCGSDGTTYSNLCE 832
Score = 28.3 bits (60), Expect = 2.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 364 TLEYAPVCGSHGKTYANKCSL 426
++E +PVC SHG Y + C L
Sbjct: 262 SVESSPVCSSHGVDYQSSCHL 282
Score = 27.5 bits (58), Expect = 5.1
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 382 VCGSHGKTYANKCSLE 429
VCGS G TY+N C L+
Sbjct: 819 VCGSDGTTYSNLCELK 834
Score = 26.6 bits (56), Expect = 9.0
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 231 SPVCGSDGKTYENPCEFYCEKDKTHSNMTI 320
SPVC S G Y++ C ++ +N+T+
Sbjct: 266 SPVCSSHGVDYQSSCHLRHHACESKTNITV 295
Score = 26.6 bits (56), Expect = 9.0
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +1
Query: 352 PCYCTLEYAPVCGSHGKTYANKCSLE 429
P C PVC ++G+T+ N+C ++
Sbjct: 402 PNRCEDVMRPVCATNGETFDNECEMK 427
>U40954-1|ABA00179.1| 251|Caenorhabditis elegans Hypothetical
protein ZK813.6 protein.
Length = 251
Score = 33.5 bits (73), Expect = 0.078
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = +1
Query: 349 SPCYCTLEYAPVC---GSHGKTYANKCSLECTQK 441
S C C E PVC G + TY+NKC +C Q+
Sbjct: 23 STCSCKPEIDPVCVREGPYQYTYSNKCVFQCAQE 56
Score = 31.1 bits (67), Expect = 0.42
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Frame = +3
Query: 198 PPPLCICGKIYSPVCGSDGK---TYENPCEFYCEKDKTHSNMTIVKNTAC 338
P C C PVC +G TY N C F C ++ + + + + C
Sbjct: 21 PNSTCSCKPEIDPVCVREGPYQYTYSNKCVFQCAQENKKDLVLLYEGSCC 70
Score = 29.5 bits (63), Expect = 1.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 207 LCICGKIYSPVCGSDGKTYENPCEFYCEK 293
+C G+ VC S+G T+ + C FY K
Sbjct: 173 MCSAGQTSLTVCDSEGNTHTDICSFYIAK 201
Score = 28.7 bits (61), Expect = 2.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 361 CTLEYAPVCGSHGKTYANKCS 423
C E+ PVC G+T+AN C+
Sbjct: 125 CPTEWNPVCDKKGQTHANFCT 145
>U39993-3|AAK72060.1| 728|Caenorhabditis elegans Hypothetical
protein F47E1.4 protein.
Length = 728
Score = 31.5 bits (68), Expect = 0.32
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +3
Query: 210 CICGKIYS-PVCGSDGKTYENPCEFYCEKDKTHSNMTIVKNTACE 341
C C + PVC +DG Y +PC C + + ++ +CE
Sbjct: 528 CSCENAHLYPVCSADGTAYFSPCHAGCREATQFGSDPVIGFASCE 572
>U40415-5|AAK39251.1| 655|Caenorhabditis elegans Hypothetical
protein K02G10.5 protein.
Length = 655
Score = 29.9 bits (64), Expect = 0.96
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +3
Query: 210 CICGKIYSPVCGSDGK-TYENPCEFYC 287
C C ++PVC D K T+ +PC C
Sbjct: 449 CHCDSFFNPVCSEDSKLTFLSPCHAGC 475
>U39993-2|AAK72059.1| 744|Caenorhabditis elegans Hypothetical
protein F47E1.2 protein.
Length = 744
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +3
Query: 210 CICGKIYSPVCGSDGKTYENPCEFYCEKDKTHSNMTIVKNTACE 341
C ++Y PVC G Y +PC C + + + ++ T+C+
Sbjct: 538 CENARLY-PVCDQTGFAYFSPCHAGCREAMQYGSDPVLDFTSCQ 580
>AL032660-2|CAA21751.1| 690|Caenorhabditis elegans Hypothetical
protein Y70G10A.3 protein.
Length = 690
Score = 29.1 bits (62), Expect = 1.7
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +1
Query: 355 CYCTLEYAPVCGSH-GKTYANKCSLECT 435
C+C +E+ PVC + G Y + C CT
Sbjct: 457 CHCKMEWNPVCDRNTGHMYYSACHAGCT 484
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,125,180
Number of Sequences: 27780
Number of extensions: 228642
Number of successful extensions: 708
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -