Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_O03
         (470 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g17620.1 68415.m02038 cyclin, putative (CYC2a) similar to cyc...    31   0.39 
At3g17750.1 68416.m02265 protein kinase family protein contains ...    30   0.91 
At5g02830.1 68418.m00225 pentatricopeptide (PPR) repeat-containi...    29   1.2  
At1g73460.1 68414.m08504 protein kinase family protein contains ...    29   2.1  
At1g73450.1 68414.m08503 protein kinase, putative similar to nuc...    29   2.1  
At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type f...    28   2.8  
At4g31850.1 68417.m04525 pentatricopeptide (PPR) repeat-containi...    27   4.8  
At4g01575.1 68417.m00205 serine protease inhibitor, Kazal-type f...    27   4.8  
At5g54030.1 68418.m06720 DC1 domain-containing protein contains ...    27   8.5  

>At2g17620.1 68415.m02038 cyclin, putative (CYC2a) similar to cyclin
           2b protein [Arabidopsis thaliana] GI:509423; contains
           Pfam profiles PF00134: Cyclin, N-terminal domain,
           PF02984: Cyclin, C-terminal domain; identical to cDNA
           cyc2a mRNA for cyclin 2a protein GI:728518
          Length = 429

 Score = 31.1 bits (67), Expect = 0.39
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 180 YSVTALPPPLCICGKIYSPVCGSDG-KTYENPCEFYC 287
           Y +   PP L     +Y+  C  DG + + + CEF+C
Sbjct: 336 YEMLRFPPSLLAATSVYTAQCTLDGSRKWNSTCEFHC 372


>At3g17750.1 68416.m02265 protein kinase family protein contains
           Pfam profile: PF00069 Eukaryotic protein kinase domain
          Length = 1138

 Score = 29.9 bits (64), Expect = 0.91
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 255 YHLTRRRDYRFFRKYITAVAELLPSIL 175
           YHL R  DY +FR+++  V ELL + L
Sbjct: 887 YHLLRLYDYFYFREHLLIVCELLKANL 913


>At5g02830.1 68418.m00225 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 852

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 375 IFQGTVARGCPPRMRCFSRLSYCCV-SCPF 289
           +F+  +A GC P  +CF+ L + CV +C +
Sbjct: 431 LFEEMLASGCEPNSQCFNILLHACVEACQY 460


>At1g73460.1 68414.m08504 protein kinase family protein contains
           protein kinase domain Pfam:PF00069
          Length = 1169

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 255 YHLTRRRDYRFFRKYITAVAELLPSIL 175
           YHL R  DY ++R+++  V ELL + L
Sbjct: 918 YHLLRLYDYFYYREHLLIVCELLKANL 944


>At1g73450.1 68414.m08503 protein kinase, putative similar to
           nuclear serine/threonine protein kinase GI:3582644 from
           [Rattus norvegicus]
          Length = 1152

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 255 YHLTRRRDYRFFRKYITAVAELLPSIL 175
           YHL R  DY ++R+++  V ELL + L
Sbjct: 901 YHLLRLYDYFYYREHLLIVCELLKANL 927


>At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type
           family protein contains Pfam domain PF00050: Kazal-type
           serine protease inhibitor domain
          Length = 117

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +3

Query: 234 PVCGSDGKTYENPCEFYCEKDKTHSNMTIVKNTACEVG 347
           PVCG+DG TY   C      D       +VK  AC+ G
Sbjct: 53  PVCGTDGVTYWCGC-----PDAACHGARVVKKGACDTG 85


>At4g31850.1 68417.m04525 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1112

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 375 IFQGTVARGCPPRMRCFSRLSYC 307
           +F+G V +GCPP    F+ L  C
Sbjct: 595 LFEGMVQKGCPPNTITFNTLFDC 617


>At4g01575.1 68417.m00205 serine protease inhibitor, Kazal-type
           family protein contains Pfam domain PF00050: Kazal-type
           serine protease inhibitor domain
          Length = 144

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +3

Query: 234 PVCGSDGKTYENPCEFYCEKDKTHSNMTIVKNTACEVG 347
           PVCG D  TY   C      D     + +VK  AC+VG
Sbjct: 80  PVCGEDSVTYWCGC-----ADALCHGVRVVKQGACDVG 112


>At5g54030.1 68418.m06720 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 419

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 222 KIYSPVCGSDGKTYENPCEF 281
           K+Y+ +  S G+ YEN C F
Sbjct: 83  KVYTHIFTSSGRIYENTCHF 102


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,404,733
Number of Sequences: 28952
Number of extensions: 205831
Number of successful extensions: 522
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)