Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_O02
         (116 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces pom...    23   4.2  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    23   7.4  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    23   7.4  

>SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 451

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = +3

Query: 15  TDFDRRITAGPDGNLYFTIVTKEDVSDIC 101
           T  D  + A   G L+F +    D  D C
Sbjct: 307 TALDLAVNAAIAGGLFFAVAAGNDAEDAC 335


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -1

Query: 92  TDVFFSDDCEVEVSIRPSCDAAIKVSHISV 3
           TD+   D   V +++   C   I  SHI V
Sbjct: 465 TDIVPYDKTRVRLAVPKGCSDYINASHIDV 494


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 74  DDCEVEVSIRPSCDAAIKVSHISV 3
           DD EV V   P    A KV+H S+
Sbjct: 540 DDAEVFVDRSPESFGATKVAHTSL 563


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 356,140
Number of Sequences: 5004
Number of extensions: 3136
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 2,362,478
effective HSP length: 19
effective length of database: 2,267,402
effective search space used: 43080638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)