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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_O02
         (116 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0338 + 2665412-2665564,2665647-2665766,2666344-2666397,266...    27   1.6  
07_03_1192 + 24698355-24698433,24699312-24699391,24700027-247004...    25   6.5  

>05_01_0338 +
           2665412-2665564,2665647-2665766,2666344-2666397,
           2666583-2666660,2667608-2667652,2668327-2668434,
           2668629-2668706,2669352-2669457,2669622-2669680,
           2670465-2670564,2670932-2671011,2671132-2671188,
           2671321-2671424,2671799-2671886,2671971-2672056,
           2672140-2672185,2672246-2672317,2672541-2672601,
           2672692-2672936
          Length = 579

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 107 VFTNVTDVFFSDDCEVEVSIRPSC 36
           VFT +T+ F  ++CE  + +R +C
Sbjct: 429 VFTPLTEPFIEEECEETLGVRSTC 452


>07_03_1192 +
           24698355-24698433,24699312-24699391,24700027-24700483,
           24700641-24700794,24700878-24701155,24701225-24701517
          Length = 446

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 24  DRRITAGPDGNLYFTIVTKED 86
           D  +TAGPDGN+   ++ K+D
Sbjct: 363 DLLMTAGPDGNVQSELLFKKD 383


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,306,354
Number of Sequences: 37544
Number of extensions: 20322
Number of successful extensions: 42
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 14,793,348
effective HSP length: 19
effective length of database: 14,080,012
effective search space used: 267520228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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