Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_O02
         (116 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53869| Best HMM Match : ABC_membrane (HMM E-Value=0.34)             26   5.5  
SB_8907| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   5.5  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.3  
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.3  

>SB_53869| Best HMM Match : ABC_membrane (HMM E-Value=0.34)
          Length = 403

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -1

Query: 86 VFFSDDCEVEVSIRPSCDAAIKVSHISV 3
          + ++DD ++ VSIRPS D +  +S + V
Sbjct: 1  MIYADDTQLYVSIRPSEDRSSVLSRLEV 28


>SB_8907| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 776

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -1

Query: 86  VFFSDDCEVEVSIRPSCDAAIKVSHISV 3
           + ++DD ++ VSIRPS D +  +S + V
Sbjct: 507 MIYADDTQLYVSIRPSEDRSSVLSRLEV 534


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 104 FTNVTDVFFSDDCEVEVSIRPSCDAAIKVS 15
           F  + D   +D+C  E  +R  CD A+ VS
Sbjct: 804 FHLLRDTNDTDECMKECCLRDECDVAVMVS 833


>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3051

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 107  VFTNVTDVFFSDDCEVEVSIRPSCDAAIKVS 15
            VFT   +    D C     ++PSCD +  +S
Sbjct: 1057 VFTEAPEASSLDTCTRACCLKPSCDISFMIS 1087


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,766,670
Number of Sequences: 59808
Number of extensions: 27091
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 16,821,457
effective HSP length: 19
effective length of database: 15,685,105
effective search space used: 298016995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)