Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_O01
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    35   0.006
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    27   2.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   3.7  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    26   3.7  
SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy...    25   8.6  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 35.1 bits (77), Expect = 0.006
 Identities = 16/30 (53%), Positives = 16/30 (53%)
 Frame = +3

Query: 90  GNFGLSGHGPSGFGHRPSGFGHGPSGFVHG 179
           G  G  G GP GF   P GFG GP GF  G
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGGPGGFGGG 250



 Score = 34.7 bits (76), Expect = 0.008
 Identities = 19/35 (54%), Positives = 19/35 (54%)
 Frame = +3

Query: 78  GLSPGNFGLSGHGPSGFGHRPSGFGHGPSGFVHGG 182
           G  PG FG    G  GFG  P GFG GP G  HGG
Sbjct: 241 GGGPGGFG---GGLGGFGGGPGGFGGGPGG--HGG 270



 Score = 33.9 bits (74), Expect = 0.014
 Identities = 17/31 (54%), Positives = 17/31 (54%)
 Frame = +3

Query: 87  PGNFGLSGHGPSGFGHRPSGFGHGPSGFVHG 179
           PG FG    GP GFG    GFG GP GF  G
Sbjct: 237 PGGFG---GGPGGFGGGLGGFGGGPGGFGGG 264



 Score = 33.1 bits (72), Expect = 0.025
 Identities = 17/33 (51%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
 Frame = +3

Query: 90  GNFGLSGH---GPSGFGHRPSGFGHGPSGFVHG 179
           G FG  GH   G  GFG  P GF  GP GF  G
Sbjct: 211 GGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGG 243



 Score = 33.1 bits (72), Expect = 0.025
 Identities = 17/34 (50%), Positives = 17/34 (50%)
 Frame = +3

Query: 78  GLSPGNFGLSGHGPSGFGHRPSGFGHGPSGFVHG 179
           G   G  G  G GP GFG  P GFG G  GF  G
Sbjct: 225 GFGGGPGGFEG-GPGGFGGGPGGFGGGLGGFGGG 257



 Score = 25.4 bits (53), Expect = 4.9
 Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
 Frame = +3

Query: 78  GLSPGNFGLSGHGPSGFGHRPSGF----GHGPSGFVHGGN 185
           G + G FG  G G  G    P GF    G G  G  HGG+
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGH 223


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -3

Query: 302 GYILS*ITFFKLANCKTLLFLRYM--FEIMLTIAFLFSGLYITTM 174
           G+I S  TF  L  C   LFL Y+  F + +    +  GL  TT+
Sbjct: 322 GFINSVKTFGSLLTCSVCLFLTYVGGFSVHMMKTTMLIGLTATTL 366


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 14/56 (25%), Positives = 33/56 (58%)
 Frame = +1

Query: 181  VIYKPLKRKAMVSMISNM*RKNNKVLQLASLKKVI*DRIYPSNKIPDKVNMNNKLE 348
            ++   L+ K + +  +N  + ++ + ++ S++  I +R+  SNK P+  +MN +LE
Sbjct: 1010 LVVNALEDKKLAATPANDVQNDSLIYRIKSVQDEI-NRLSTSNKSPEVASMNVRLE 1064


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1019

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/51 (21%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +3

Query: 195  TEEESDGQHDFEHVAQEQQSLAVGELEEGDLGQD-IPIQQDSRQSEHEQQA 344
            ++EE +   ++   A E+   +  E+E+ + G+D   +++ +RQ + +  A
Sbjct: 958  SDEEEEESEEYSEDASEEDGYSESEVEDEESGEDWDELERKARQEDAKHDA 1008


>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -2

Query: 288 LNHLLQARQLQDFVVLALHV 229
           + HLLQAR+L  +++L L+V
Sbjct: 320 VRHLLQARELVAWILLQLYV 339


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,626,153
Number of Sequences: 5004
Number of extensions: 31636
Number of successful extensions: 97
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)