Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_O01
(508 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26485| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.044
SB_20922| Best HMM Match : RVT_1 (HMM E-Value=0) 33 0.10
SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17) 33 0.10
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 31 0.41
SB_55431| Best HMM Match : DnaJ_C (HMM E-Value=7.2e-13) 31 0.72
SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.95
SB_31903| Best HMM Match : Amino_oxidase (HMM E-Value=3.36312e-44) 30 0.95
SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035) 30 0.95
SB_9884| Best HMM Match : zf-BED (HMM E-Value=2.8) 30 1.3
SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_7301| Best HMM Match : S-antigen (HMM E-Value=2.1) 30 1.3
SB_6115| Best HMM Match : efhand (HMM E-Value=0.22) 30 1.3
SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0) 29 1.7
SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 2.2
SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_17930| Best HMM Match : Pkinase (HMM E-Value=0) 29 2.9
SB_39606| Best HMM Match : DUF164 (HMM E-Value=0.47) 29 2.9
SB_39569| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13) 28 3.8
SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8) 28 3.8
SB_24909| Best HMM Match : Mab-21 (HMM E-Value=3.4e-06) 28 3.8
SB_725| Best HMM Match : Apolipoprotein (HMM E-Value=0.51) 28 3.8
SB_50380| Best HMM Match : PMC2NT (HMM E-Value=2.4) 28 5.1
SB_9718| Best HMM Match : Metallothio_2 (HMM E-Value=1.3) 28 5.1
SB_45593| Best HMM Match : ArfGap (HMM E-Value=3.3e-37) 28 5.1
SB_35467| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_40732| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7
SB_31923| Best HMM Match : DnaJ (HMM E-Value=2.8e-38) 27 6.7
SB_4970| Best HMM Match : IBV_3C (HMM E-Value=2.2) 27 6.7
SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31) 27 8.9
SB_3595| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
>SB_26485| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 801
Score = 34.7 bits (76), Expect = 0.044
Identities = 20/67 (29%), Positives = 27/67 (40%)
Frame = -2
Query: 234 HVRNHADHRFPLQWFVYYHHVQIHSAHVQIHSVYAQIHSAHVHLVRNYQG*VHFDRYY*D 55
HV H + + +HV +H A S Y I+ HVH R H +
Sbjct: 150 HVHVHQPRTRSSTTYTFINHVHVHQARTCASSTYMFINHVHVHQPRTCASTTHMFINH-V 208
Query: 54 HVHQIRS 34
HVHQ R+
Sbjct: 209 HVHQART 215
Score = 32.3 bits (70), Expect = 0.24
Identities = 21/76 (27%), Positives = 33/76 (43%)
Frame = -2
Query: 261 LQDFVVLALHVRNHADHRFPLQWFVYYHHVQIHSAHVQIHSVYAQIHSAHVHLVRNYQG* 82
L D L L +R H R +++ +HV +H + + Y I+ HVH R
Sbjct: 122 LDDCSTLWLTLRVHCTLRCLGTAYMFINHVHVHQPRTRSSTTYTFINHVHVHQARTCASS 181
Query: 81 VHFDRYY*DHVHQIRS 34
+ + HVHQ R+
Sbjct: 182 TYMFINH-VHVHQPRT 196
>SB_20922| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 576
Score = 33.5 bits (73), Expect = 0.10
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = +3
Query: 144 GFGHGPSGFVHGGNIQTTEEESDGQHDFEHVAQE---QQSLAVGELEE 278
GFGHG S F + GN + + DG HDF A++ QS + ELE+
Sbjct: 151 GFGHGDSFFGNFGNFRNSGFHEDG-HDFHRAARQAEFHQSSSDQELEK 197
>SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17)
Length = 1038
Score = 33.5 bits (73), Expect = 0.10
Identities = 14/63 (22%), Positives = 29/63 (46%)
Frame = -2
Query: 189 VYYHHVQIHSAHVQIHSVYAQIHSAHVHLVRNYQG*VHFDRYY*DHVHQIRSH*GHGYQA 10
VY + ++ + ++ YA+++ + HL R Y Y + H R++ H Y+
Sbjct: 757 VYRTYAHVYRPYAHVYRTYARVYRTYAHLYRTYAHGTEHMHVYRTYAHLYRTY-AHVYRT 815
Query: 9 RSH 1
+H
Sbjct: 816 YAH 818
Score = 30.7 bits (66), Expect = 0.72
Identities = 10/49 (20%), Positives = 25/49 (51%)
Frame = -2
Query: 237 LHVRNHADHRFPLQWFVYYHHVQIHSAHVQIHSVYAQIHSAHVHLVRNY 91
+H+ H + +Y +V+++ + ++ YAQ++ + H+ R Y
Sbjct: 892 MHMCTEHMHVYRTYAHLYRTYVRVYRTYAHVYRTYAQVYRTYAHVYRTY 940
Score = 28.3 bits (60), Expect = 3.8
Identities = 11/49 (22%), Positives = 24/49 (48%)
Frame = -2
Query: 237 LHVRNHADHRFPLQWFVYYHHVQIHSAHVQIHSVYAQIHSAHVHLVRNY 91
LH + + LQ+ Y H ++ + ++ YA+++ + H+ R Y
Sbjct: 716 LHESPDSSRTYSLQYRPYAH---VYRTYAHVYRTYARVYRTYAHVYRTY 761
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 31.5 bits (68), Expect = 0.41
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +3
Query: 81 LSPGNFGLSGHGPSGFGHRPSGFGHGPSGFVHGG 182
L+P FG SG P+ G GFG P F +GG
Sbjct: 311 LNPFAFGASGFNPAFAGFGSMGFGGFPGAFGYGG 344
Score = 30.7 bits (66), Expect = 0.72
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 78 GLSPGNFGLSGHGPSGFGHRPSGFGHG--PSGF 170
G S N +G G GFG P FG+G PSGF
Sbjct: 317 GASGFNPAFAGFGSMGFGGFPGAFGYGGFPSGF 349
>SB_55431| Best HMM Match : DnaJ_C (HMM E-Value=7.2e-13)
Length = 278
Score = 30.7 bits (66), Expect = 0.72
Identities = 16/40 (40%), Positives = 16/40 (40%)
Frame = +3
Query: 72 QSGLSPGNFGLSGHGPSGFGHRPSGFGHGPSGFVHGGNIQ 191
Q GNF G GFG FG GP F G IQ
Sbjct: 60 QKVFQTGNFSSYSTGQKGFGFEGMDFGPGPDPFKKEGPIQ 99
>SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2143
Score = 30.3 bits (65), Expect = 0.95
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 105 SGHGPSGFGHRPSGFGHGPS 164
+GHGP+ GH P+ GH P+
Sbjct: 506 NGHGPTANGHEPTSNGHEPT 525
>SB_31903| Best HMM Match : Amino_oxidase (HMM E-Value=3.36312e-44)
Length = 1021
Score = 30.3 bits (65), Expect = 0.95
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 7/90 (7%)
Frame = +3
Query: 111 HGPSGFGHRPSGFGHGPSGFVH-GGNIQ-----TTEEESDGQHDFEHVAQEQQSLAVGEL 272
HG GH HG H G++Q EE D QH +++ E+ + G+
Sbjct: 396 HGKKNMGHEEGDMQHGKKNMGHEEGDMQHGKKNMEHEEGDMQHRKKNMGHEEGDMQHGKK 455
Query: 273 EEGDLGQDIPI-QQDSRQSEHEQQAGIKKM 359
G D+ +++ E E Q G K M
Sbjct: 456 NMGHKEGDMQHGKKNMGHEEGEMQHGKKNM 485
Score = 29.9 bits (64), Expect = 1.3
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Frame = +3
Query: 111 HGPSGFGHRPSGFGHGPSGFVHGGNIQTTEEESDGQHDFEHVAQEQQSLAVGELEEGDLG 290
HG GH HG H E+ D QH +++ E+ + G+ G
Sbjct: 326 HGKKNMGHEKGDMQHGKKNMGH--------EKGDMQHGKKNMEHEEGDMQHGKKNMGH-- 375
Query: 291 QDIPIQQDSRQSEHEQ---QAGIKKM 359
++ +QQ + EHE+ Q G K M
Sbjct: 376 EEGDMQQGKKSMEHEKGDMQHGKKNM 401
Score = 28.7 bits (61), Expect = 2.9
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 9/92 (9%)
Frame = +3
Query: 111 HGPSGFGHRPSGFGHGPSGFVH-GGNIQ-----TTEEESDGQHDFEHVAQEQQSLAVGEL 272
HG GH HG H G++Q EE D QH +++ E+ + G+
Sbjct: 242 HGKKNMGHEEGDMQHGKKNIEHEKGDMQHGKKNVEHEEGDMQHGKKNMEHEKGDMQHGKK 301
Query: 273 EEGDLGQDIPIQQDSRQSEHEQ---QAGIKKM 359
G ++ +Q + HE+ Q G K M
Sbjct: 302 NMGH--EEGDMQHGKKNMGHERGDMQHGKKNM 331
Score = 28.7 bits (61), Expect = 2.9
Identities = 18/76 (23%), Positives = 32/76 (42%)
Frame = +3
Query: 111 HGPSGFGHRPSGFGHGPSGFVHGGNIQTTEEESDGQHDFEHVAQEQQSLAVGELEEGDLG 290
HG GH+ HG H EE + QH +++ E+ ++ G+ G
Sbjct: 452 HGKKNMGHKEGDMQHGKKNMGH--------EEGEMQHGKKNMGHERGNMQHGKKNMGH-- 501
Query: 291 QDIPIQQDSRQSEHEQ 338
++ +Q + EHE+
Sbjct: 502 EEGNMQHGKKNMEHEE 517
Score = 28.3 bits (60), Expect = 3.8
Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 4/87 (4%)
Frame = +3
Query: 111 HGPSGFGHRPSGFGHGPSGFVHGGNIQTTEEESDGQHDFEHVAQEQQSLAVG----ELEE 278
HG GH HG H EE D QH +++ E+ + G E E+
Sbjct: 340 HGKKNMGHEKGDMQHGKKNMEH--------EEGDMQHGKKNMGHEEGDMQQGKKSMEHEK 391
Query: 279 GDLGQDIPIQQDSRQSEHEQQAGIKKM 359
GD+ +++ E + Q G K M
Sbjct: 392 GDMQHG---KKNMGHEEGDMQHGKKNM 415
>SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035)
Length = 258
Score = 30.3 bits (65), Expect = 0.95
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +3
Query: 78 GLSPGNFGLSGHGPSGFG---HRPSGFGHGPSGFVHGG 182
G G +G GHG G+G + G G+G SG+ GG
Sbjct: 175 GYGGGGYGGGGHGGGGYGGGGYGGGGGGYGGSGYGGGG 212
>SB_9884| Best HMM Match : zf-BED (HMM E-Value=2.8)
Length = 129
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Frame = -2
Query: 180 HHVQIHS--AH-VQIHSVYAQIHSAHVHLVRNYQG*VHFDRYY*DHVHQIRSH*GHGYQA 10
H+V+ H+ AH V++H+V ++H+ H V+ + VH + + VH +++H +
Sbjct: 60 HNVKTHNVKAHNVKVHNV--KVHNVKAHNVKTHNVKVHNVKAHNVKVHNVKTHNVKAHNV 117
Query: 9 RSH 1
+ H
Sbjct: 118 KVH 120
>SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1283
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Frame = +3
Query: 111 HGPSGFGHRPSGFGHG-PSGFV---HGGNIQTTE 200
H P GH+P FGHG P G V HGG I ++
Sbjct: 988 HQPHPNGHQPMAFGHGRPRGDVPAHHGGPIPISD 1021
>SB_7301| Best HMM Match : S-antigen (HMM E-Value=2.1)
Length = 682
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Frame = +3
Query: 111 HGPSGFGHRPSGFGHG-PSGFV---HGGNIQTTE 200
H P GH+P FGHG P G V HGG I ++
Sbjct: 121 HQPHPNGHQPMAFGHGRPRGDVPAHHGGPIPISD 154
>SB_6115| Best HMM Match : efhand (HMM E-Value=0.22)
Length = 822
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +3
Query: 189 QTTEEESDGQHDFEHVAQEQQSLAVGELEEGDLGQDIPIQQDSRQSEHEQQAGIKK 356
Q + + + G D AQE Q L VGE + D Q+ P+ ++++ E + +++
Sbjct: 136 QGSVDTAHGPPDVVQSAQEGQDLTVGETNQ-DAQQEAPVYENAKAEEQAESETVQQ 190
>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
Length = 1291
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/70 (24%), Positives = 32/70 (45%)
Frame = -2
Query: 240 ALHVRNHADHRFPLQWFVYYHHVQIHSAHVQIHSVYAQIHSAHVHLVRNYQG*VHFDRYY 61
A +R++ +H F ++HH H H ++ + HS H L+R++ R++
Sbjct: 981 AQRLRHYYNHSFHTTLNYHHHHYHYHPFHYRL----LRHHSFHYRLLRHHPFHYRVLRHH 1036
Query: 60 *DHVHQIRSH 31
H +R H
Sbjct: 1037 PFHYRVLRHH 1046
>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 3804
Score = 29.1 bits (62), Expect = 2.2
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = +3
Query: 90 GNFGLSGHGPSGFGHRPSGFGHGPSGFVHGGNIQTTEEESDGQHDFEH 233
G G G G G G G G G G GG +E+ DG D +H
Sbjct: 133 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGDGDEDDDGDEDDDH 180
>SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 824
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Frame = -2
Query: 180 HHVQIHSAHVQ-IHSVYAQIHSAHVHLVRNYQG*VHFDRYY*DHVHQIRSH*GHGYQARS 4
H H H+ H+ H H+H ++ H + H H+ H H Y +
Sbjct: 441 HETTRHDTHLHDTHTHETTRHDTHLHDTHTHETTRHDTHLHDTHTHETTRHDTHLYDTHT 500
Query: 3 H 1
H
Sbjct: 501 H 501
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Frame = -2
Query: 180 HHVQIHSAHVQ-IHSVYAQIHSAHVHLVRNYQG*VHFDRYY*DHVHQIRSH*GHGYQARS 4
H H H+ H+ H H+H ++ H Y H H+ H H + +
Sbjct: 456 HETTRHDTHLHDTHTHETTRHDTHLHDTHTHETTRHDTHLYDTHTHETTRHDTHLHDMHT 515
Query: 3 H 1
H
Sbjct: 516 H 516
>SB_17930| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 286
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +1
Query: 256 LQLASLKKVI*DRIYPSNKIPDKVNMNNKLE*KKCNVCVLNYKFYFSTKLN 408
++L K++ ++ + D +NNKL K CNV +L+ F F L+
Sbjct: 1 VELKKTKRIYAMKVVKKELVNDDEALNNKLSGKFCNVLLLSTFFRFGFGLS 51
>SB_39606| Best HMM Match : DUF164 (HMM E-Value=0.47)
Length = 626
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +3
Query: 123 GFGHRPSGFGHGPSGFVHGGNIQTTEEESDGQHDFEHVAQEQQSLAVGELEEGD 284
G PS G PS ++ + +++ DG +D + + L +GEL++ D
Sbjct: 132 GRSSSPSRRGGSPSRILNSSPLSPSKQVVDGDNDTVQRQRRELQLLIGELKDRD 185
>SB_39569| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 857
Score = 28.3 bits (60), Expect = 3.8
Identities = 21/67 (31%), Positives = 30/67 (44%)
Frame = +3
Query: 150 GHGPSGFVHGGNIQTTEEESDGQHDFEHVAQEQQSLAVGELEEGDLGQDIPIQQDSRQSE 329
G GP+G ++EE S + D E+ + S + EE I Q S S+
Sbjct: 530 GQGPAGPTDEHLAHSSEEPSPQESDPENKVTYEGSEEADDEEESRTWPTKDIPQHSLDSD 589
Query: 330 HEQQAGI 350
HE QAG+
Sbjct: 590 HE-QAGL 595
>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
Length = 492
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +3
Query: 99 GLSGHGPSGFGHRPS-GFGHGPSGFVHG 179
GL G G GH P G GHG +G VHG
Sbjct: 144 GLGHCGGPGHGHGPGHGHGHG-AGLVHG 170
>SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8)
Length = 361
Score = 28.3 bits (60), Expect = 3.8
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -3
Query: 167 STRPMSKSTRSMPKSTRPMST*SEITRAKXXXXXXXXXXXXXSEATRAMATKP 9
+TRP S ST+ ST+P S S+ R + A+ A+KP
Sbjct: 31 ATRPTSTSTKPTTASTKPTSPPSQAARTRNTAEKPEEKPASSGAASPIPASKP 83
>SB_24909| Best HMM Match : Mab-21 (HMM E-Value=3.4e-06)
Length = 702
Score = 28.3 bits (60), Expect = 3.8
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +3
Query: 78 GLSPGNFGLSGHGPSGFGHRPSGFGH--GPSGFVHGGN 185
G PG +G G+G G GH G+ H G GF G N
Sbjct: 105 GAGPGGYG--GYGAWGGGHEVGGWAHHEGFGGFGPGWN 140
>SB_725| Best HMM Match : Apolipoprotein (HMM E-Value=0.51)
Length = 567
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +3
Query: 75 SGLSPGNFGLSG--HGPSGFGHRPSGFGHGPSGF 170
+GL FG +G G +GFG+ +GFG +GF
Sbjct: 85 TGLGTSAFGTTGTGFGAAGFGNTGTGFGTTGTGF 118
>SB_50380| Best HMM Match : PMC2NT (HMM E-Value=2.4)
Length = 362
Score = 27.9 bits (59), Expect = 5.1
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Frame = +3
Query: 123 GFGHRPSGFGHGPSGFVHGGNIQTTEEESDG----QHDFEHVAQEQQSLAVGELEEGDLG 290
G G R G GHG G GGN EE + D + + ++ + V + ++ D G
Sbjct: 154 GGGGRGGGRGHGRGGSGGGGNCTCDEEAKEAVVVDNDDSNNSYEVEEKVVVVDSDDSDCG 213
>SB_9718| Best HMM Match : Metallothio_2 (HMM E-Value=1.3)
Length = 279
Score = 27.9 bits (59), Expect = 5.1
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Frame = +3
Query: 123 GFGHRPSGFGHGPSGFVHGGNIQTTEEESDG----QHDFEHVAQEQQSLAVGELEEGDLG 290
G G R G GHG G GGN EE + D + + ++ + V + ++ D G
Sbjct: 71 GGGGRGGGRGHGRGGSGGGGNCTCDEEAKEAVVVDNDDSNNSYEVEEKVVVVDSDDSDCG 130
>SB_45593| Best HMM Match : ArfGap (HMM E-Value=3.3e-37)
Length = 732
Score = 27.9 bits (59), Expect = 5.1
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +3
Query: 90 GNFGLSGHGPSGF--GHRPSGFGHGPSGFVHGGNIQTTEEESDG 215
G FG G SGF G G G G SG GG T++ ++DG
Sbjct: 626 GMFGTPGGQQSGFHGGIGGGGMGGGFSG--QGGGFPTSQAQADG 667
>SB_35467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 541
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = -2
Query: 234 HVRNHADHRFPLQWFVYYHHVQIHSAHVQIHSVYAQIHSAHVHLVRNY 91
HV + H V + + S+H S YA + S+H H+ +Y
Sbjct: 287 HVTSSHAHATSSYAHVTTSYAHVTSSHAHATSSYAHVTSSHAHVTSSY 334
>SB_40732| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 92
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +3
Query: 129 GHRPSGFGHGPSGFVH-GGNIQTTEEE 206
GH P G GH P+G H G ++ EE
Sbjct: 20 GHHPVGNGHIPNGIPHKGSKVKEFHEE 46
>SB_31923| Best HMM Match : DnaJ (HMM E-Value=2.8e-38)
Length = 161
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +3
Query: 72 QSGLSPGNFGLSGHGPSGFGHRPSGFGHGPSGF 170
Q GNF G GFG FG GP F
Sbjct: 125 QKVFQTGNFSSYSTGQKGFGFEGMDFGPGPDPF 157
>SB_4970| Best HMM Match : IBV_3C (HMM E-Value=2.2)
Length = 1094
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 197 SGLYITTMYKSTRPMSKSTRSMPKSTRPMST 105
S +Y ++K RP +STR +STRP T
Sbjct: 486 SPVYCHFVHKPCRPQVQSTRPQVQSTRPQLT 516
>SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31)
Length = 662
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +3
Query: 183 NIQTTEEESDGQHDFEHVAQEQQSLAVGELEEGDLGQDIPIQQDSRQSEHEQQ 341
N QT++ + H + Q+QQ + E Q +P QQ + H+QQ
Sbjct: 164 NNQTSQTHQEQSHQ-QQQQQDQQKPDMQPPEHATQPQSLPDQQQQQHPGHQQQ 215
>SB_3595| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -2
Query: 219 ADHRFPLQ--WFVYYHHVQIHSAHVQIHSVYAQIHSAHVHLVRNY 91
ADH PL + V HH ++ H +++ + +IH V Y
Sbjct: 66 ADHGIPLNTSYAVAPHHSGVYPVHEALYTAWKRIHRVTVTSTEEY 110
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 27.1 bits (57), Expect = 8.9
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 8/81 (9%)
Frame = +3
Query: 135 RPSGFGHGPSGFVHGGNIQTTEEESDGQH--------DFEHVAQEQQSLAVGELEEGDLG 290
+PS SG + T EEES+G H D E ++ L G +G G
Sbjct: 706 QPSPGKENVSGVANSAEPPTKEEESEGLHSTLVLFSADDEFTTKQDMCLCCGSFGKGPEG 765
Query: 291 QDIPIQQDSRQSEHEQQAGIK 353
Q I Q Q H G+K
Sbjct: 766 QLIVCSQ-CGQCFHPYCVGVK 785
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,747,724
Number of Sequences: 59808
Number of extensions: 237066
Number of successful extensions: 1038
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -