Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_O01
(508 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g27430.1 68414.m03343 GYF domain-containing protein contains ... 36 0.021
At2g15690.1 68415.m01796 pentatricopeptide (PPR) repeat-containi... 32 0.26
At4g19200.1 68417.m02833 proline-rich family protein contains pr... 30 0.78
At2g46800.2 68415.m05840 zinc transporter (ZAT) identical to zin... 30 0.78
At2g46800.1 68415.m05839 zinc transporter (ZAT) identical to zin... 30 0.78
At2g04190.1 68415.m00404 meprin and TRAF homology domain-contain... 30 0.78
At2g04170.1 68415.m00402 meprin and TRAF homology domain-contain... 30 0.78
At4g15460.1 68417.m02363 glycine-rich protein 30 1.0
At2g05510.1 68415.m00583 glycine-rich protein 30 1.0
At5g51420.1 68418.m06375 long-chain-alcohol O-fatty-acyltransfer... 29 1.4
At5g45350.1 68418.m05567 proline-rich family protein contains pr... 29 1.4
At3g60730.1 68416.m06794 pectinesterase family protein contains ... 29 1.4
At5g66620.1 68418.m08397 LIM domain-containing protein contains ... 29 1.8
At5g33390.1 68418.m03985 glycine-rich protein similar to nuclear... 29 1.8
At3g20890.1 68416.m02641 heterogeneous nuclear ribonucleoprotein... 29 1.8
At1g15840.1 68414.m01901 expressed protein 29 1.8
At5g35735.1 68418.m04276 auxin-responsive family protein similar... 29 2.4
At4g35680.1 68417.m05065 expressed protein contains Pfam profile... 29 2.4
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 28 3.1
At3g03290.1 68416.m00326 universal stress protein (USP) family p... 28 3.1
At1g16630.1 68414.m01992 expressed protein 28 3.1
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 28 4.2
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 28 4.2
At5g46730.1 68418.m05757 glycine-rich protein 27 5.5
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 27 5.5
At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containi... 27 5.5
At3g09220.1 68416.m01096 laccase family protein / diphenol oxida... 27 5.5
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 27 5.5
At4g25340.1 68417.m03647 immunophilin-related / FKBP-type peptid... 27 7.3
At2g05440.2 68415.m00575 glycine-rich protein 27 7.3
At2g05440.1 68415.m00574 glycine-rich protein 27 7.3
At3g58810.2 68416.m06555 zinc transporter, putative similar to z... 27 9.6
At3g58810.1 68416.m06554 zinc transporter, putative similar to z... 27 9.6
At3g25910.1 68416.m03230 expressed protein 27 9.6
At2g42560.1 68415.m05267 late embryogenesis abundant domain-cont... 27 9.6
At1g55540.1 68414.m06356 proline-rich family protein contains pr... 27 9.6
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 27 9.6
At1g30570.1 68414.m03740 protein kinase family protein contains ... 27 9.6
>At1g27430.1 68414.m03343 GYF domain-containing protein contains Pfam
profile: PF02213 GYF domain
Length = 1531
Score = 35.5 bits (78), Expect = 0.021
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
Frame = +3
Query: 102 LSGHGPSGFGHRPSGFGHG---PSGFVHGGNIQTTEEESD---GQHDFEHV----AQEQQ 251
LSG+ S F H + F HG PS H + Q + S G D EH+ Q+QQ
Sbjct: 733 LSGNRMSQFEHESNFFNHGDQLPSNQHHQQHFQNRDMLSHLHIGDQDLEHLITLQLQQQQ 792
Query: 252 SLAVGELEEGDLGQDIPIQQDSRQSEHEQQ 341
+ + + ++ L Q IQ Q E E Q
Sbjct: 793 KIQMQQQQKIQLQQQQKIQLQQHQLEQEHQ 822
>At2g15690.1 68415.m01796 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 579
Score = 31.9 bits (69), Expect = 0.26
Identities = 19/60 (31%), Positives = 23/60 (38%)
Frame = +3
Query: 72 QSGLSPGNFGLSGHGPSGFGHRPSGFGHGPSGFVHGGNIQTTEEESDGQHDFEHVAQEQQ 251
Q G +G GH P GHRP G P G N Q + Q + Q+QQ
Sbjct: 129 QQGGQMSQYG--GHNPQHGGHRPQYGGQRPQYGGPGNNYQNQNVQQSNQSQYYTPQQQQQ 186
>At4g19200.1 68417.m02833 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 179
Score = 30.3 bits (65), Expect = 0.78
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +3
Query: 99 GLSGHGPSGFGHRPSGFGHGPS-GFVHGGN 185
G + H P G G+GH P+ GF HGG+
Sbjct: 114 GHASHNPYGHAVGHGGYGHAPAHGFGHGGH 143
>At2g46800.2 68415.m05840 zinc transporter (ZAT) identical to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; member of the cation diffusion
facilitator (CDF) family, or cation efflux (CE) family,
PMID:11500563
Length = 398
Score = 30.3 bits (65), Expect = 0.78
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = +3
Query: 111 HGPS-GFGHRPSGFGHGPSGFVHGGNIQTTEEESDGQHDFEHVAQEQQSLAVGELEE 278
HG S G GH G GH HG + T D +H H E + A G++ E
Sbjct: 184 HGHSHGHGH---GHGHDHHNHSHGVTVTTHHHHHDHEHGHSHGHGEDKHHAHGDVTE 237
>At2g46800.1 68415.m05839 zinc transporter (ZAT) identical to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; member of the cation diffusion
facilitator (CDF) family, or cation efflux (CE) family,
PMID:11500563
Length = 398
Score = 30.3 bits (65), Expect = 0.78
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = +3
Query: 111 HGPS-GFGHRPSGFGHGPSGFVHGGNIQTTEEESDGQHDFEHVAQEQQSLAVGELEE 278
HG S G GH G GH HG + T D +H H E + A G++ E
Sbjct: 184 HGHSHGHGH---GHGHDHHNHSHGVTVTTHHHHHDHEHGHSHGHGEDKHHAHGDVTE 237
>At2g04190.1 68415.m00404 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 411
Score = 30.3 bits (65), Expect = 0.78
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +3
Query: 75 SGLSPGNFGLSGHGPS-GFGHRPSGFGHGPSGFVHGGNIQTTEEESDGQH 221
+G PG G GHGP G G G+G G HG + T + H
Sbjct: 72 AGPGPGYGGGGGHGPGYGGGGDGRGYGSETGGGNHGPEVTRTLRDEPPSH 121
>At2g04170.1 68415.m00402 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to NtN2 [Medicago truncatula] GI:3776084; contains Pfam
profile PF00917: MATH domain
Length = 420
Score = 30.3 bits (65), Expect = 0.78
Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = +3
Query: 78 GLSPGNFGLSGHGPSGFGHRPSGFG--HGPSGFVHGG 182
G PG G G GP G G P G G GP G GG
Sbjct: 46 GFGPGGPGFGGRGPRGPGFGPRGPGPWSGPRGPRPGG 82
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = +3
Query: 78 GLSPGNFGLSGHGPSGFGHRPSGFGHGPSGFVHGG 182
G PG G GP G G P G G GP G GG
Sbjct: 25 GFGPGG---PGFGPGGPGFGPGGPGFGPGGPGFGG 56
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/29 (55%), Positives = 16/29 (55%)
Frame = +3
Query: 96 FGLSGHGPSGFGHRPSGFGHGPSGFVHGG 182
FG G GP GFG GFG G GF GG
Sbjct: 17 FGGRGGGP-GFGPGGPGFGPGGPGFGPGG 44
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +3
Query: 90 GNFGLSGHGPSGFGHRPSGFGHGPSG 167
G G G GP G G P G G GP G
Sbjct: 19 GRGGGPGFGPGGPGFGPGGPGFGPGG 44
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/31 (51%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +3
Query: 78 GLSPGNFGLSGHGPSGFGHR-PSGFGHGPSG 167
G PG G GP GFG R P G G GP G
Sbjct: 39 GFGPGGPGFGPGGP-GFGGRGPRGPGFGPRG 68
>At4g15460.1 68417.m02363 glycine-rich protein
Length = 148
Score = 29.9 bits (64), Expect = 1.0
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = +3
Query: 99 GLSGHGPSGFGHRPSGFGHGPSGFVHGGNIQTTEEESDGQH 221
G GH G GH G GH G H G E +G H
Sbjct: 67 GGGGHASVGGGHASGGGGHAVEGGGHAGGGGGGHGEEEGGH 107
>At2g05510.1 68415.m00583 glycine-rich protein
Length = 127
Score = 29.9 bits (64), Expect = 1.0
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +3
Query: 90 GNFGLSGHGPSGFGHRPSGFGHGPSGFVHGG 182
G GL G+G GH G GH G HGG
Sbjct: 70 GGHGLDGYGGGHGGHYGGGGGHYGGGGGHGG 100
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = +3
Query: 78 GLSPGNFGLSGHGPSGFGHRPSGFGHGPSGFVHGG 182
GL G GH G GH G GHG G GG
Sbjct: 73 GLDGYGGGHGGHYGGGGGHYGGGGGHGGGGHYGGG 107
>At5g51420.1 68418.m06375 long-chain-alcohol O-fatty-acyltransferase
family protein / wax synthase family protein contains
similarity to wax synthase wax synthase - Simmondsia
chinensis, PID:g5020219 similar to wax synthase
[gi:5020219] from Simmondsia chinensis
Length = 435
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = -2
Query: 303 WVYPVLNHLLQARQLQDFVVL---ALHVRNHADHRFPLQWFVYY 181
W YP+ +L + Q VV+ LH+ NH H +P+ FV Y
Sbjct: 117 WEYPI--EVLFSNQFVTKVVILSVVLHMYNHIQHIYPIVLFVLY 158
>At5g45350.1 68418.m05567 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 177
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 84 SPGNFGLSGHGPSGFGHRPS-GFGHGPSGFVHG 179
S G +G + +G GFGH G+GHG F HG
Sbjct: 124 SHGPYGHAAYG-HGFGHGHGYGYGHGHGKFKHG 155
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +3
Query: 105 SGHGPSGFGHRPSGFGHGPS-GFVHG 179
S HGP G GFGHG G+ HG
Sbjct: 123 SSHGPYGHAAYGHGFGHGHGYGYGHG 148
>At3g60730.1 68416.m06794 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 519
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 108 GHGPSGFGHRPSGFGHGPSGFVHG 179
GHGP+ HRP+ HGP HG
Sbjct: 160 GHGPTRPKHRPTRPNHGPGRSHHG 183
>At5g66620.1 68418.m08397 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 644
Score = 29.1 bits (62), Expect = 1.8
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Frame = +3
Query: 216 QHDFEHVAQEQQSLAVGELEEGDLGQ------DIPIQQDSRQSEHEQQAGIKKM 359
QH+ + +Q+SLA E E+ DL D+ IQ+ SRQ E E++ +++
Sbjct: 38 QHEADIQKAKQRSLATHEAEKLDLATHEAEQLDLAIQEFSRQEEEEERRRTREL 91
>At5g33390.1 68418.m03985 glycine-rich protein similar to nuclear
antigen EBNA-1 (GI:3342234) {Cercopithecine herpesvirus
15}
Length = 118
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = +3
Query: 75 SGLSPGNFGLSGHGPSGFGHRPSGFGHGPSGFVHGG 182
SG G SG G SG G R +G G+G G GG
Sbjct: 23 SGSGGSGSGGSGSGGSGSGGRANGRGNGGRGSGRGG 58
>At3g20890.1 68416.m02641 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative similar to SP|P52597
Heterogeneous nuclear ribonucleoprotein F (hnRNP F)
{Homo sapiens}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 350
Score = 29.1 bits (62), Expect = 1.8
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Frame = +3
Query: 84 SPGNFGLSGHGPSGFGHRPSGFGHGPSGFVHGGN-----IQTTEEESDGQHDFEH 233
S G GL G SG G G G G G + GG+ +Q DG+ D EH
Sbjct: 210 SGGGGGLGGGNGSGGG----GGGGGGGGRISGGSSPRRHVQRARSSDDGKEDIEH 260
>At1g15840.1 68414.m01901 expressed protein
Length = 126
Score = 29.1 bits (62), Expect = 1.8
Identities = 17/46 (36%), Positives = 19/46 (41%)
Frame = +3
Query: 78 GLSPGNFGLSGHGPSGFGHRPSGFGHGPSGFVHGGNIQTTEEESDG 215
G G G SG G G G G G G SG HG + + DG
Sbjct: 41 GEGGGGEGTSGEGGGGGGDGTKGGGDGISGGGHGDGLGCSGGGGDG 86
>At5g35735.1 68418.m04276 auxin-responsive family protein similar to
auxin-induced protein AIR12 GI:11357190 [Arabidopsis
thaliana]
Length = 404
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -2
Query: 246 VLALHVRNHADHRFPLQWFVYYHHVQIHSAHVQIHSVY 133
V AL VR DH++ W VY+H V + + I +++
Sbjct: 293 VFALLVRPKPDHKYRTYWNVYHHTVGYTTIILSIVNIF 330
>At4g35680.1 68417.m05065 expressed protein contains Pfam profile
PF03087: Arabidopsis protein of unknown function
Length = 503
Score = 28.7 bits (61), Expect = 2.4
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +3
Query: 189 QTTEEESDGQHDFEHVAQEQQSLAVGELEEGDLGQDIPIQQDSRQSEHEQQAGIKKM 359
Q EE+ DG+ D + V E + E + GD Q+ D HE+ G +++
Sbjct: 451 QGNEEKEDGEDDEQVVESEGE-----ESDNGDYDQNQDFDDDEDDYNHEEDGGFEEV 502
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 84 SPGNFGLSGHGPSGFGHRPSGFGHGPSGFVHGG 182
SPGN G+G + G+ G G+G G +GG
Sbjct: 49 SPGNNDRGGYGGANSGYGGRGQGYGGRGSGYGG 81
>At3g03290.1 68416.m00326 universal stress protein (USP) family
protein contains Pfam profile: PF00582 universal stress
protein family
Length = 274
Score = 28.3 bits (60), Expect = 3.1
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +3
Query: 198 EEESDGQ--HDFEHVAQEQQSLAVGELEEGDLGQDIPIQQDSRQSEHEQ 338
EEE+DG ++E +E++ GE EE D G I + +SEHE+
Sbjct: 43 EEETDGDSTSEYEEFEEEKERGGEGEGEEQDDG--CKIVESGYKSEHEE 89
>At1g16630.1 68414.m01992 expressed protein
Length = 845
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 165 GFVHGGNIQTTEEESDGQHDFEHVAQEQQSLAVGELEEGDLGQDI 299
G + GG++ +EE +D +HD V +E+ GE+ +DI
Sbjct: 618 GEIAGGSLSVSEEATDVEHDGNEVEEEESGF--GEVVNDAGSEDI 660
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +3
Query: 90 GNFGLSGHGPSGFGHRPSGFGHGPS-GFVHGGN 185
G G G+G GH +G G+G S GF GN
Sbjct: 180 GGSGAGGYGGDATGHGGAGGGYGSSGGFGSSGN 212
Score = 26.6 bits (56), Expect = 9.6
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 84 SPGNFGLSGHGPSGFGHRPS-GFGHGPSGFVHGG 182
S G FG G+G G G+ S G+G G G+ G
Sbjct: 121 SGGGFGGGGYGGGGGGYGGSGGYGGGAGGYGGSG 154
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 78 GLSPGNFGLSGHGPSGFGHRPSGFGHGPSGFVHGG 182
G+ P + G G G GF R G+G G G+ GG
Sbjct: 108 GVHPADSG-GGGGGGGFARR-GGYGGGRGGYARGG 140
>At5g46730.1 68418.m05757 glycine-rich protein
Length = 290
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 90 GNFGLSGHGPSGFGHRPSGFGHGPSGFVHGG 182
G+ G G G +G H SG+G G G GG
Sbjct: 170 GHGGGGGGGSAGGAHGGSGYGGGEGGGAGGG 200
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 27.5 bits (58), Expect = 5.5
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +3
Query: 84 SPGNFGLSGHGPSGFGHR-PSGFG-HGPSGF 170
S G G G+G SG+G R SG+G G SG+
Sbjct: 625 SGGGGGRGGYGDSGYGGRGESGYGSRGDSGY 655
>At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containing
protein similar to Hsc70-interacting protein (Hip) from
{Homo sapiens} SP|P50502, {Rattus norvegicus} SP|P50503;
contains Pfam profile PF00515: tetratricopeptide repeat
(TPR) domain
Length = 441
Score = 27.5 bits (58), Expect = 5.5
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Frame = +3
Query: 78 GLSPGNF--GLSGHGPSGFGHRPSGF--GHGPSGFVHGG 182
G PG F G+ G P G G P GF G G G + GG
Sbjct: 295 GGMPGGFPGGMPGGFPGGMGGMPGGFPGGMGGMGGMPGG 333
>At3g09220.1 68416.m01096 laccase family protein / diphenol oxidase
family protein similar to laccase [Pinus
taeda][GI:13661201], laccase GB:CAA74105 [Populus
balsamifera subsp. trichocarpa]; contains Pfam profile:
Multicopper oxidases
Length = 567
Score = 27.5 bits (58), Expect = 5.5
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = -2
Query: 243 LALHVRNHADHRFPLQWFVYYHHVQI 166
L +HV NH+ H + W +H + +
Sbjct: 66 LVIHVLNHSPHNITIHWHGIFHKLTV 91
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 81 LSPGNFGLSGHGPSGFGHRPSGFGHGPSGFVHGG 182
+ P N G SG+ P G +G+G+G +G +GG
Sbjct: 229 MQPQNTG-SGYPPYGGSGYGTGYGYGSNGVGYGG 261
>At4g25340.1 68417.m03647 immunophilin-related / FKBP-type
peptidyl-prolyl cis-trans isomerase-related immunophilin
FKBP46 - Spodoptera frugiperda (fall
armyworm),PIR2:A55320
Length = 477
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 198 EEESDGQHDFEHVAQEQQSLAVGELEEGDLGQDIPIQQDSRQSEHE 335
E D + D+EH + + VGE EE D + ++D + E E
Sbjct: 96 EYYQDDEDDYEHDEDDSDGIDVGESEEDD-SCEYDSEEDEQLDEFE 140
>At2g05440.2 68415.m00575 glycine-rich protein
Length = 154
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +3
Query: 90 GNFGLSGHGPSGFGHRPSGFGHGPSGFVHGG 182
G+ G G G G G G GHG G+ GG
Sbjct: 49 GHGGHGGGGGHGHGGHNGGGGHGLDGYGGGG 79
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +3
Query: 90 GNFGLSGHGPSGFGH-RPSGFGHGPSGFVHGG 182
G++G G G G GH G G+G G HGG
Sbjct: 108 GHYGGGGGGHGGGGHYGGGGGGYGGGGGHHGG 139
Score = 26.6 bits (56), Expect = 9.6
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +3
Query: 90 GNFGLSGHGPSGFGHRPSGFGH-GPSGFVHGG 182
G GL G+G G GH G GH G G +GG
Sbjct: 68 GGHGLDGYGGGG-GHYGGGGGHYGGGGGHYGG 98
>At2g05440.1 68415.m00574 glycine-rich protein
Length = 127
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +3
Query: 90 GNFGLSGHGPSGFGHRPSGFGHGPSGFVHGG 182
G+ G G G G G G GHG G+ GG
Sbjct: 49 GHGGHGGGGGHGHGGHNGGGGHGLDGYGGGG 79
Score = 26.6 bits (56), Expect = 9.6
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +3
Query: 90 GNFGLSGHGPSGFGHRPSGFGH-GPSGFVHGG 182
G GL G+G G GH G GH G G +GG
Sbjct: 68 GGHGLDGYGGGG-GHYGGGGGHYGGGGGHYGG 98
>At3g58810.2 68416.m06555 zinc transporter, putative similar to zinc
transporter 4; ZnT4 [Mus musculus]
gi|2582990|gb|AAB82593; similar to zinc transporter ZAT
[Arabidopsis thaliana] gi|4206640|gb|AAD11757; member of
the cation diffusion facilitator (CDF) family, or cation
efflux (CE) family, PMID:11500563
Length = 393
Score = 26.6 bits (56), Expect = 9.6
Identities = 17/38 (44%), Positives = 17/38 (44%)
Frame = +3
Query: 111 HGPSGFGHRPSGFGHGPSGFVHGGNIQTTEEESDGQHD 224
HG G GH GHG S HG I TE D HD
Sbjct: 200 HG-HGHGHSHDN-GHGHS-HDHGHGIAATEHHHDSGHD 234
>At3g58810.1 68416.m06554 zinc transporter, putative similar to zinc
transporter 4; ZnT4 [Mus musculus]
gi|2582990|gb|AAB82593; similar to zinc transporter ZAT
[Arabidopsis thaliana] gi|4206640|gb|AAD11757; member of
the cation diffusion facilitator (CDF) family, or cation
efflux (CE) family, PMID:11500563
Length = 432
Score = 26.6 bits (56), Expect = 9.6
Identities = 17/38 (44%), Positives = 17/38 (44%)
Frame = +3
Query: 111 HGPSGFGHRPSGFGHGPSGFVHGGNIQTTEEESDGQHD 224
HG G GH GHG S HG I TE D HD
Sbjct: 239 HG-HGHGHSHDN-GHGHS-HDHGHGIAATEHHHDSGHD 273
>At3g25910.1 68416.m03230 expressed protein
Length = 372
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 192 TTEEESDGQHDFEHVAQEQQSLAVGELEEG 281
T + SDG+ E V +E++ + V E EEG
Sbjct: 129 TVVDLSDGERGEEEVEEEEEEVVVEEEEEG 158
>At2g42560.1 68415.m05267 late embryogenesis abundant
domain-containing protein / LEA domain-containing
protein low similarity to LEA protein [Glycine max]
GI:1389897; contains Pfam profile PF02987: Late
embryogenesis abundant protein
Length = 635
Score = 26.6 bits (56), Expect = 9.6
Identities = 14/46 (30%), Positives = 18/46 (39%)
Frame = +3
Query: 108 GHGPSGFGHRPSGFGHGPSGFVHGGNIQTTEEESDGQHDFEHVAQE 245
G G G FG+GP G V EE G+ +V +E
Sbjct: 538 GEAEYGRGSEKDVFGYGPKGTVEEARRDVGEEYGGGRGSERYVEEE 583
>At1g55540.1 68414.m06356 proline-rich family protein contains
proline rich extensin domain, INTERPRO:IPR002965
Length = 915
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 75 SGLSPGNFGLSGHGPSGFGHRPSGFGHGPSGF 170
+ L+ G+ G +G P G G G G G GF
Sbjct: 825 AALASGSGGFAGAAPGGGGGGFGGLGSGTGGF 856
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 26.6 bits (56), Expect = 9.6
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +3
Query: 183 NIQTTEEES--DGQHDFEHVAQEQQSLAVGELEEGDLGQDIPIQQDSRQSEHEQ 338
N+Q EEES +G D E V E+ + E D+ + + + +++E E+
Sbjct: 842 NLQVEEEESLENGDMDHEEVVAEENGNE--QRNEDDVAEHVEEHHEEKEAEEEE 893
>At1g30570.1 68414.m03740 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 849
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -3
Query: 224 IMLTIAFLFSGLYITTMYKSTRPMSKSTRSMPKSTRPM 111
I + I F+F G+ + + K R S +++ P RP+
Sbjct: 439 IAIIIFFVFLGILVVCLCKKRRSKSDESKNNPPGWRPL 476
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,334,968
Number of Sequences: 28952
Number of extensions: 164554
Number of successful extensions: 692
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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