Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_N24
         (584 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    31   0.094
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce...    29   0.50 
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch...    28   0.87 
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    28   1.2  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    27   2.7  
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.5  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    25   6.2  
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    25   6.2  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    25   8.1  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    25   8.1  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   8.1  
SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom...    25   8.1  

>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 31.5 bits (68), Expect = 0.094
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
 Frame = -3

Query: 375 HISPTP-SIVLPFVSELIKKCQTMDF----VCIDLFR*HRATRQKK 253
           H SPT    VL F++  I +C +  F    VC+D F+ H    QKK
Sbjct: 555 HTSPTQHKAVLEFLNSCINRCISRVFAYLDVCVDCFKKHSVNSQKK 600


>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 29.1 bits (62), Expect = 0.50
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = +1

Query: 277 SPKQINTDEVHRLTFFDQLRNERQDDRWSWGYVNS---NGSGQEKIKSTTTARTTNAVIY 447
           SPK      +  L+  D ++ ++   +   GY+++   NGS Q K     + +T N++  
Sbjct: 355 SPKSKRVKTLENLSIMDFVQPKQMFGKEPEGYLSNQSNNGSAQNKKSGDNSEKTKNSLKS 414

Query: 448 KSGDSSNT 471
            S  S+NT
Sbjct: 415 SSKKSANT 422


>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
           Nak1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +1

Query: 349 DDRWSWGYVNSNGSGQEKIKSTTTARTTNAVIYKSGDSSNTTEDVNPCSPFI-PPPARGF 525
           DD W +G +    S    I  T+T+ TT A       S+  T  V P S  +  PP+   
Sbjct: 318 DDGWEFGTIKQGQSNVSSITGTSTSTTTAAT-----SSTTVTGTVIPKSSTVHEPPSSND 372

Query: 526 SAP 534
           S P
Sbjct: 373 SHP 375


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
 Frame = -3

Query: 459 ISTFIYYSVSCPGCCRAFNFFL----TRSVTVHISPTPSIVLPFVSELIKKCQTMDFVCI 292
           IS F+ +++  PG  + ++  +    +R +   IS  P + +    ++IKKC  ++F+CI
Sbjct: 129 ISEFLRWALMPPGYVKEWHVGVRVKSSRKLVAFISAVP-LSIRVRDKIIKKCAEVNFLCI 187

Query: 291 DLFR*HRATRQKKPSKNQIK 232
                H+  R K+ +   IK
Sbjct: 188 -----HKKLRSKRLTPLLIK 202


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +1

Query: 373 VNSNGSGQEKIKSTTTARTTNAVIYKSGDSSNTTEDVNPCSPFIPP-PARGFSAPGRRIS 549
           V+ N   + + KST   + +     K   S+  T  + P   F PP  A+   AP +R  
Sbjct: 415 VSVNAPAETQDKSTVVPQESATATPKRSPSATPTSALPPIGKFAPPTTAKAQPAPEKRRG 474

Query: 550 E 552
           E
Sbjct: 475 E 475


>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 452

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 14/41 (34%), Positives = 16/41 (39%)
 Frame = +1

Query: 457 DSSNTTEDVNPCSPFIPPPARGFSAPGRRISEVKCYEFLWN 579
           D    T D N CSPF   P +  S   RR         +WN
Sbjct: 29  DGMKKTSDENGCSPFTLKPIKSTSDRKRRRHSRMSIVNVWN 69


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +1

Query: 385 GSGQEKIKSTTTARTTNAVIYKSG---DSSNTTEDVNPCSPFIPPP 513
           G+ Q    S +T++  + V Y  G   +S+NTT+ +N  + F PPP
Sbjct: 103 GTSQYPSASFSTSQHPSQV-YNDGSTLNSNNTTQQLNNNNGFQPPP 147


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
 Frame = +1

Query: 352 DRWSWGY-VNSNGSGQEKIKSTTTARTTNAVIYKSGDSSNTTEDVNPCSPFIPPPARGFS 528
           D W W +  +SN  G     S  ++  T+ +   S    NT+   +P S     P+R  +
Sbjct: 106 DGWPWHHNSSSNPQGYAWTPSLLSSNATSYLHSGSSPHGNTSNHPSPISSLESLPSRSST 165

Query: 529 APG 537
             G
Sbjct: 166 GSG 168


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 371 YPQLHLSSCRSFRS*SKNVKRWTSSVLICFGDTVQHVKKNQVKIK 237
           YP    +    F+  S N   W+S +  CF D V + +K +  IK
Sbjct: 181 YPHSMDAEISKFKWDSNNNNDWSSLMKDCFRDVVNNNRKMKEIIK 225


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 271 TVSPKQINTDEVHRLTFFDQLRNERQDDRWSWG 369
           TVS K+ N D V RL   D  R E    +W+ G
Sbjct: 96  TVSEKEENKDAVTRLDSQDVKRFEETYSQWNSG 128


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = +1

Query: 373 VNSNGSGQEKIKST----TTARTTNAVIYKSGDSSNTTEDVNPCSPFIPPPARGFSAPGR 540
           V+ +GS    I ST    T + TT+ +   S  SS+     +  S    PP+ G S   +
Sbjct: 596 VSESGSSSASITSTYPSSTLSMTTSHLSSSSVHSSSAHSSSSRSSSMSLPPSAGSSTSLQ 655

Query: 541 RIS 549
           RIS
Sbjct: 656 RIS 658


>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 347 CRSFRS*SKNVKRWTSSVLICFGDTVQHVKKNQV 246
           C+S R  +  +     S  ICFG  ++H+KK  +
Sbjct: 81  CQSLRGLAYYLLEQYQSSAICFGFALKHLKKEDL 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,039,123
Number of Sequences: 5004
Number of extensions: 37749
Number of successful extensions: 117
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)