Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_N24
         (584 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13386-1|CAA73816.1|  371|Homo sapiens thyroid transcription fac...    30   5.2  
U89995-1|AAC51294.1|  376|Homo sapiens DNA binding protein FKHL1...    30   5.2  
AL499604-1|CAI12803.1|  373|Homo sapiens forkhead box E1 (thyroi...    30   5.2  

>Y13386-1|CAA73816.1|  371|Homo sapiens thyroid transcription factor
           2 protein.
          Length = 371

 Score = 30.3 bits (65), Expect = 5.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 447 IYYSVSCPGCCRAFNFFLTRSVTVHISPTPS 355
           +YY  + PG CR F     R ++  + P PS
Sbjct: 209 VYYPAASPGPCRVFGLVPERPLSPELGPAPS 239


>U89995-1|AAC51294.1|  376|Homo sapiens DNA binding protein FKHL15
           protein.
          Length = 376

 Score = 30.3 bits (65), Expect = 5.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 447 IYYSVSCPGCCRAFNFFLTRSVTVHISPTPS 355
           +YY  + PG CR F     R ++  + P PS
Sbjct: 214 VYYPAASPGPCRVFGLVPERPLSPELGPAPS 244


>AL499604-1|CAI12803.1|  373|Homo sapiens forkhead box E1 (thyroid
           transcription factor 2) protein.
          Length = 373

 Score = 30.3 bits (65), Expect = 5.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 447 IYYSVSCPGCCRAFNFFLTRSVTVHISPTPS 355
           +YY  + PG CR F     R ++  + P PS
Sbjct: 211 VYYPAASPGPCRVFGLVPERPLSPELGPAPS 241


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,712,522
Number of Sequences: 237096
Number of extensions: 1340903
Number of successful extensions: 3391
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3391
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6098631048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)