Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_N24
         (584 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81477-8|CAC70076.1|  739|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AL117201-6|CAB55065.2|  739|Caenorhabditis elegans Hypothetical ...    27   9.8  

>Z81477-8|CAC70076.1|  739|Caenorhabditis elegans Hypothetical
           protein Y53H1C.3 protein.
          Length = 739

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 513 RRRDER*AWIYIFGCVTAI 457
           R R +R  W ++FGCVT+I
Sbjct: 712 RERLDRIPWWFVFGCVTSI 730


>AL117201-6|CAB55065.2|  739|Caenorhabditis elegans Hypothetical
           protein Y53H1C.3 protein.
          Length = 739

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 513 RRRDER*AWIYIFGCVTAI 457
           R R +R  W ++FGCVT+I
Sbjct: 712 RERLDRIPWWFVFGCVTSI 730


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,397,807
Number of Sequences: 27780
Number of extensions: 223082
Number of successful extensions: 590
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)