Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_N24
         (584 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41400.1 68418.m05030 zinc finger (C3HC4-type RING finger) fa...    29   3.0  
At5g54062.1 68418.m06725 hypothetical protein                          28   4.0  
At5g60190.1 68418.m07545 Ulp1 protease family protein low simila...    27   7.0  
At3g58240.1 68416.m06493 meprin and TRAF homology domain-contain...    27   9.2  

>At5g41400.1 68418.m05030 zinc finger (C3HC4-type RING finger)
           family protein similar to RING-H2 finger protein RHA1a
           [Arabidopsis thaliana] GI:3790554; contains Pfam profile
           PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 176

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +1

Query: 265 CCTVSPKQI-NTDEVHRLTFFDQLRNERQDDRWSWGY 372
           CC V   +  N DE+ RLT    + +    DRW  GY
Sbjct: 104 CCAVCLHEFENDDEIRRLTNCQHIFHRSCLDRWMMGY 140


>At5g54062.1 68418.m06725 hypothetical protein
          Length = 207

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 508 PPARGFSAPGRRISEVKCYEFLWNI 582
           P + GFS PG ++   KC+  L NI
Sbjct: 31  PTSAGFSLPGSQVDLAKCWSSLLNI 55


>At5g60190.1 68418.m07545 Ulp1 protease family protein low
           similarity to sentrin/SUMO-specific protease [Homo
           sapiens] GI:6906859; contains Pfam profile PF02902: Ulp1
           protease family, C-terminal catalytic domain
          Length = 226

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 414 RAFNFFLTRSVTVHISPTPSIVLPFVSELIKKCQTMDFV 298
           R   F+L+   TVH S T S++ P ++  I  C   +++
Sbjct: 35  RVIEFYLSFLSTVHSSTTISLIPPSIAFWISNCPDTEYL 73


>At3g58240.1 68416.m06493 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 317

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 244 FTWFFLTCCTVSPKQINTDE 303
           FTW     C+VSPK I +D+
Sbjct: 9   FTWVIKNFCSVSPKPIYSDQ 28


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,423,692
Number of Sequences: 28952
Number of extensions: 193070
Number of successful extensions: 562
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)