Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_N22
         (373 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14096.1 68417.m02176 F-box family protein contains F-box dom...    28   2.3  
At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEME...    27   3.0  
At5g59990.1 68418.m07523 expressed protein ; expression supporte...    27   4.0  
At3g47580.1 68416.m05180 leucine-rich repeat transmembrane prote...    26   7.0  
At3g27180.1 68416.m03399 expressed protein                             26   9.2  
At2g35550.2 68415.m04355 expressed protein                             26   9.2  
At2g35550.1 68415.m04354 expressed protein                             26   9.2  

>At4g14096.1 68417.m02176 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 468

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 18/80 (22%), Positives = 36/80 (45%)
 Frame = -1

Query: 310 SQKGLHYFKLKLQLIYPSALASPKTAIAGPALIMPFLMLRPIFSIFLKTFHFGSGAAETV 131
           S   LH + ++ + ++PS +   KT +    ++ P L    ++   LKT +  S   E  
Sbjct: 115 SDLDLHVY-METEFVFPSEMFLSKTLVRLKLMLYPLLEFEDVYLPKLKTLYIDSCYFEKY 173

Query: 130 DKARTRANTKKNILEKFIVE 71
               T+  +   ILE  +++
Sbjct: 174 GIGLTKLLSGCPILEDLVLD 193


>At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEMETER
           protein [Arabidopsis thaliana] GI:21743571; contains
           Pfam profile PF00730: HhH-GPD superfamily base excision
           DNA repair protein
          Length = 1729

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -2

Query: 165 LSISAQAQPKLSTKPEPERTRRKISLRSSSLNIVNFNK 52
           +S++A+  PKLS+  E ER  R + +      I+N N+
Sbjct: 789 MSLAARFPPKLSSSREDERNVRSVVVEDPEGCILNLNE 826


>At5g59990.1 68418.m07523 expressed protein ; expression supported
           by MPSS
          Length = 241

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -2

Query: 126 KPEPERTRRKISLRSSSLNIVNFNKRNIELRFICKHHTRGSR 1
           K  PE  + KI    S  N+ NFNKR   +++ C+     SR
Sbjct: 157 KYSPEEKKEKIEKYRSKRNLRNFNKR---IKYECRKTLADSR 195


>At3g47580.1 68416.m05180 leucine-rich repeat transmembrane protein
           kinase, putative protein kinase Xa21 - Oryza sativa,
           PIR:A57676
          Length = 1011

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +2

Query: 2   RLPRVWCLHINLNSIFRLLKLTIFNDELLKDIFLRVRSGSGFVDS 136
           RL ++  L +++N  F +    I+N   L+D+FL    GSGF  S
Sbjct: 208 RLSQMVGLGLSMNKFFGVFPPAIYNLSALEDLFL---FGSGFSGS 249


>At3g27180.1 68416.m03399 expressed protein
          Length = 518

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 97  FSSCSLWFWLCRQFRLRLSRNGKSSRKL 180
           F SC LW W C   R +L+  G S   L
Sbjct: 88  FDSCRLWGWRC---RAKLAVRGSSDNAL 112


>At2g35550.2 68415.m04355 expressed protein
          Length = 226

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 156 SAQAQPKLSTKPEPERTRRKISLRSSSLNIVNFNKR 49
           S    P  + KP+P+R +R +S +S     +   KR
Sbjct: 79  SVNQSPSKALKPKPQRKKRSVSNKSKKTPSIPETKR 114


>At2g35550.1 68415.m04354 expressed protein
          Length = 271

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 156 SAQAQPKLSTKPEPERTRRKISLRSSSLNIVNFNKR 49
           S    P  + KP+P+R +R +S +S     +   KR
Sbjct: 124 SVNQSPSKALKPKPQRKKRSVSNKSKKTPSIPETKR 159


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,764,716
Number of Sequences: 28952
Number of extensions: 93398
Number of successful extensions: 317
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 497853200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)