Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_N20
         (425 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0476 + 6215401-6217445,6217538-6217630,6218031-6218133,621...    27   4.8  
11_01_0332 + 2483743-2484131,2486062-2486182,2486307-2486426,248...    27   6.3  
06_01_0921 + 7104923-7105396,7106624-7106768,7107078-7107121           27   6.3  
01_06_0300 + 28312590-28313939                                         27   6.3  

>04_01_0476 +
           6215401-6217445,6217538-6217630,6218031-6218133,
           6218237-6218254
          Length = 752

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 91  FIRNKCSYQNHYVVYMIYHGFGDS 20
           FIR   + ++HYVV+ + H F +S
Sbjct: 522 FIRKVANIEDHYVVHDLLHDFAES 545


>11_01_0332 +
           2483743-2484131,2486062-2486182,2486307-2486426,
           2486897-2487127,2487205-2487783
          Length = 479

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = -1

Query: 392 GCLALHCERLTKGKSYDGTSFSTDSPEKIDGYAFTFIIIVTNNPIDNI 249
           G  +L+  R  KGK   GTS +T S EK  G   T I+   N+ I+ I
Sbjct: 432 GSRSLNSRRTRKGKGQSGTS-ATSSAEKSKG---TSIVSRINSKIERI 475


>06_01_0921 + 7104923-7105396,7106624-7106768,7107078-7107121
          Length = 220

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = -2

Query: 139 SKRILFLLDLYIRAHVFIRNKCSYQNHYVVYMIYHGFGD---SKTVVRD 2
           S+ I+F + +  R  V +RN  SY  H+    I  G G+   SKT  RD
Sbjct: 170 SECIIFRVSVS-RYQVTVRNHQSYSGHFTEVKIVSGLGNAVGSKTSARD 217


>01_06_0300 + 28312590-28313939
          Length = 449

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 10/43 (23%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -2

Query: 133 RILFLLDLYIRAHVFIRNKCSYQN-HYVVYMIYHGFGDSKTVV 8
           R+ F+ +L+      +    S+ + H++ Y++Y G  +S T++
Sbjct: 109 RVTFVCELHAAEENLVVLSASFDHAHHIYYLVYDGIDESLTMI 151


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,543,516
Number of Sequences: 37544
Number of extensions: 182211
Number of successful extensions: 420
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)