Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_N20
         (425 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21119| Best HMM Match : Orexin_rec2 (HMM E-Value=3.9)               30   0.70 
SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   1.6  
SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     29   2.1  
SB_32313| Best HMM Match : RnaseH (HMM E-Value=2.5)                    28   2.8  
SB_9773| Best HMM Match : TPR_2 (HMM E-Value=3.2e-06)                  27   6.5  
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.6  
SB_29316| Best HMM Match : Pox_A32 (HMM E-Value=0.026)                 27   8.6  
SB_3057| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-26)                  27   8.6  

>SB_21119| Best HMM Match : Orexin_rec2 (HMM E-Value=3.9)
          Length = 306

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 8/34 (23%), Positives = 21/34 (61%)
 Frame = -2

Query: 142 HSKRILFLLDLYIRAHVFIRNKCSYQNHYVVYMI 41
           H+KR+  +L+  ++A + +  KC +  H + +++
Sbjct: 28  HNKRVRLVLERLLKAGIMLNEKCEFSKHEIKFLM 61


>SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 16/82 (19%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
 Frame = +1

Query: 73  SIYYV*IHVLGYINLIKTIFVSSVVDVKSV-IESAAALLLFKKYCNNRVLCIVLKVIMFN 249
           +I  + I ++ YIN    I + +++DV  + I +   ++ +  + +N ++  ++ +I+  
Sbjct: 24  NINIIIITIINYINHNSNIIIITIIDVIIITIINIITIINYINHNSNIIITTIIDIIIIT 83

Query: 250 ILSIGLFVTIIMNVKAYPSIFS 315
           I  I   +  I+N+     I++
Sbjct: 84  ITIINNNIITIINIIVIAIIYN 105


>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1449

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 303 WIRLHVHNNCHKQSNRQYI 247
           W++ H  NNCH +SN++ +
Sbjct: 481 WLQRHQRNNCHGESNKKAV 499


>SB_32313| Best HMM Match : RnaseH (HMM E-Value=2.5)
          Length = 721

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 14/45 (31%), Positives = 28/45 (62%)
 Frame = +3

Query: 99  ARIYKSNKNNIRFECR*CQKCYRVSSCPTVIQEIL*QSSFVYRVK 233
           +R+YK  +N ++ EC+ C+K Y  S+    ++ +   S++ YR+K
Sbjct: 448 SRLYKELRNQVQRECKVCRKRY-YSNKVAALKRL--ASTWPYRIK 489


>SB_9773| Best HMM Match : TPR_2 (HMM E-Value=3.2e-06)
          Length = 553

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 249 IKHYNF*HDTQNSIVTIFLE*Q*-GSC*LDNTFDINDTRNEYCFY 118
           I H N   D  NS+VTI +  +       DN  D +DT +++C++
Sbjct: 195 IIHDNSDDDDNNSVVTIMVVIELIDGTNADNIVDSSDTHDDFCYH 239


>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1974

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +1

Query: 256 SIGLFVTIIMNVKAYPSIFSGESVENEVPSYDFPFVSRSQWSARQPNQTLPL 411
           SIG  VT+ ++V ++  +F  E  +     YD+PF     W+     Q + L
Sbjct: 660 SIGQSVTLGLDVTSHLGMFINERPKFMAEHYDYPFNELLIWAVLCKMQKMAL 711


>SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 951

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 99  ARIYKSNKNNIRFECR*CQKCY 164
           AR+YK  +N ++ EC+ C++ Y
Sbjct: 539 ARLYKELRNQVQRECKVCRERY 560


>SB_29316| Best HMM Match : Pox_A32 (HMM E-Value=0.026)
          Length = 288

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 419 GVFRGKVWFGCLALHCERLTKGKSYDG 339
           G FRGK  F C+ L C      K+Y+G
Sbjct: 30  GPFRGK--FDCIVLVCPTFVYNKTYEG 54


>SB_3057| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-26)
          Length = 236

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 293 FTFIIIVTNNPIDNILNIITFNTIHKTRLLQYFLNNSRAAAD 168
           F  ++I   +   NIL ++ F  + K R +  F   S AAAD
Sbjct: 29  FFLVLIFIMSMFGNILVMLAFRAVRKLRTVTNFFVVSLAAAD 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,744,591
Number of Sequences: 59808
Number of extensions: 236355
Number of successful extensions: 632
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)