Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_N20
         (425 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24150.1 68416.m03032 expressed protein                             27   4.0  
At1g52780.1 68414.m05966 expressed protein                             27   5.3  

>At3g24150.1 68416.m03032 expressed protein
          Length = 343

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 301 PSIFSGESVENEVPSYDFPFVSRSQWSARQPNQTLPLKTPV 423
           P I    S     PSY   +  ++Q S+ +P+QT+    PV
Sbjct: 137 PKIQEPVSASTNEPSYHHEYRQQAQQSSTKPSQTVQAAVPV 177


>At1g52780.1 68414.m05966 expressed protein 
          Length = 1059

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +1

Query: 184 LLFKKYCNNRVLCIVLKVIMFNILSIGLFVTIIMNVKAYPSIFSGESVENEVPSYDFPFV 363
           LLF    N   L  V  ++M  + ++G  + +I   +A     +  +   E PSYD   +
Sbjct: 759 LLFYVSSNTDSLPFV-SLVMLGVQALGYSLPLITGAEALFKRKAASATTYETPSYD---L 814

Query: 364 SRSQW 378
            RSQW
Sbjct: 815 QRSQW 819


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,880,289
Number of Sequences: 28952
Number of extensions: 161471
Number of successful extensions: 418
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)