Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_N19
(500 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62241 Cluster: 40S ribosomal protein S8; n=93; Eukaryo... 278 6e-74
UniRef50_Q3UA25 Cluster: Bone marrow macrophage cDNA, RIKEN full... 266 3e-70
UniRef50_Q8MLY8 Cluster: 40S ribosomal protein S8; n=82; Eukaryo... 250 2e-65
UniRef50_Q5JR95 Cluster: Ribosomal protein S8; n=8; Euteleostomi... 219 4e-56
UniRef50_Q08069 Cluster: 40S ribosomal protein S8; n=21; Eukaryo... 193 2e-48
UniRef50_Q4N3P0 Cluster: 40S ribosomal protein S8; n=4; Eukaryot... 180 1e-44
UniRef50_P25204 Cluster: 40S ribosomal protein S8; n=19; Eukaryo... 167 1e-40
UniRef50_Q6QP50 Cluster: Putative 40S ribosomal protein S8; n=1;... 149 3e-35
UniRef50_UPI000049933B Cluster: conserved hypothetical protein; ... 138 9e-32
UniRef50_Q7R1W8 Cluster: Ribosomal protein S8; n=1; Giardia lamb... 112 5e-24
UniRef50_A6RAQ0 Cluster: Ribosomal protein S8; n=1; Ajellomyces ... 111 9e-24
UniRef50_Q8SWC9 Cluster: Ribosomal protein S8; n=1; Encephalitoz... 101 9e-21
UniRef50_Q9AW20 Cluster: 40S ribosomal protein S8; n=1; Guillard... 96 5e-19
UniRef50_Q3LVX9 Cluster: Ribosomal protein S8; n=1; Bigelowiella... 78 1e-13
UniRef50_A3CSQ2 Cluster: 30S ribosomal protein S8e; n=5; Archaea... 66 4e-10
UniRef50_Q6L0D3 Cluster: 30S ribosomal protein S8e; n=7; Archaea... 66 6e-10
UniRef50_Q9HJD0 Cluster: 30S ribosomal protein S8e; n=5; Euryarc... 64 2e-09
UniRef50_O58830 Cluster: 30S ribosomal protein S8e; n=6; Archaea... 58 1e-07
UniRef50_Q0W1L5 Cluster: 30S ribosomal protein S8e; n=3; Euryarc... 58 1e-07
UniRef50_Q980W3 Cluster: 30S ribosomal protein S8e; n=4; Archaea... 58 1e-07
UniRef50_Q5C1R4 Cluster: SJCHGC03085 protein; n=1; Schistosoma j... 54 1e-06
UniRef50_Q8TV55 Cluster: 30S ribosomal protein S8e; n=1; Methano... 54 2e-06
UniRef50_P61300 Cluster: 30S ribosomal protein S8e; n=5; Methano... 52 7e-06
UniRef50_A0RXG5 Cluster: Ribosomal protein S8E; n=2; Thermoprote... 51 2e-05
UniRef50_Q8ZTB8 Cluster: 30S ribosomal protein S8e; n=6; Archaea... 49 7e-05
UniRef50_Q9YDY0 Cluster: 30S ribosomal protein S8e; n=3; Desulfu... 49 7e-05
UniRef50_Q4SV68 Cluster: Chromosome undetermined SCAF13783, whol... 46 6e-04
UniRef50_A7Q5T2 Cluster: Chromosome chr14 scaffold_54, whole gen... 45 8e-04
UniRef50_Q962J8 Cluster: PV1H14180_P; n=2; Plasmodium vivax|Rep:... 36 0.39
UniRef50_Q9VL72 Cluster: CG5899-PA, isoform A; n=5; Diptera|Rep:... 36 0.68
UniRef50_Q8MUP4 Cluster: Synaptonemal complex protein SYP-1; n=1... 36 0.68
UniRef50_Q7MRG0 Cluster: NIFEN2; n=1; Wolinella succinogenes|Rep... 35 1.2
UniRef50_Q2W531 Cluster: TPR repeat; n=3; Magnetospirillum|Rep: ... 35 1.2
UniRef50_Q9RZ17 Cluster: Amino acid ABC transporter, permease pr... 34 2.1
UniRef50_A5E7M6 Cluster: Putative uncharacterized protein; n=1; ... 34 2.1
UniRef50_UPI0000F2CAD6 Cluster: PREDICTED: hypothetical protein;... 33 2.7
UniRef50_Q2GJW1 Cluster: Phage uncharacterized protein; n=1; Ana... 33 4.8
UniRef50_Q11AT2 Cluster: Dihydroxy-acid and 6-phosphogluconate d... 33 4.8
UniRef50_Q7XEZ3 Cluster: Putative uncharacterized protein; n=1; ... 33 4.8
UniRef50_Q6M9P1 Cluster: Putative uncharacterized protein; n=1; ... 32 6.3
UniRef50_Q1JT20 Cluster: Zinc finger domain containing protein, ... 32 6.3
>UniRef50_P62241 Cluster: 40S ribosomal protein S8; n=93;
Eukaryota|Rep: 40S ribosomal protein S8 - Homo sapiens
(Human)
Length = 208
Score = 278 bits (681), Expect = 6e-74
Identities = 127/164 (77%), Positives = 142/164 (86%)
Frame = +2
Query: 2 ISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDT 181
ISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRLD
Sbjct: 3 ISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDV 62
Query: 182 GNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLG 361
GNF+WGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLG
Sbjct: 63 GNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLG 122
Query: 362 RKKGAKLTEAEEAIINEKRSRKTAKKYLSRQRLSKVEGGLEEQF 493
RKKGAKLT EE I+N+KRS+K KKY R++ +K+ LEEQF
Sbjct: 123 RKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQF 166
>UniRef50_Q3UA25 Cluster: Bone marrow macrophage cDNA, RIKEN
full-length enriched library, clone:I830031J02
product:ribosomal protein S8, full insert sequence; n=9;
Deuterostomia|Rep: Bone marrow macrophage cDNA, RIKEN
full-length enriched library, clone:I830031J02
product:ribosomal protein S8, full insert sequence - Mus
musculus (Mouse)
Length = 152
Score = 266 bits (651), Expect = 3e-70
Identities = 121/150 (80%), Positives = 132/150 (88%)
Frame = +2
Query: 2 ISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDT 181
ISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRLD
Sbjct: 3 ISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDV 62
Query: 182 GNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLG 361
GNF+WGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLG
Sbjct: 63 GNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLG 122
Query: 362 RKKGAKLTEAEEAIINEKRSRKTAKKYLSR 451
RKKGAKLT EE I+N+KRS+K KKY R
Sbjct: 123 RKKGAKLTPEEEEILNKKRSKKIQKKYDER 152
>UniRef50_Q8MLY8 Cluster: 40S ribosomal protein S8; n=82;
Eukaryota|Rep: 40S ribosomal protein S8 - Drosophila
melanogaster (Fruit fly)
Length = 208
Score = 250 bits (611), Expect = 2e-65
Identities = 119/166 (71%), Positives = 136/166 (81%), Gaps = 2/166 (1%)
Frame = +2
Query: 2 ISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDT 181
ISRD HKRRATGGKR +RKKRK+ELGRPAANTKLG R+H VR+RGGNTK RALRL+T
Sbjct: 3 ISRDSAHKRRATGGKRKSLRKKRKFELGRPAANTKLGSGRVHKVRTRGGNTKLRALRLET 62
Query: 182 GNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLG 361
GNFAW SE RKTRI DVVYNASNNELVRTKTLVKN+IVV+DATPFRQWYE+HY+LPLG
Sbjct: 63 GNFAWASEGVARKTRIADVVYNASNNELVRTKTLVKNSIVVIDATPFRQWYEAHYVLPLG 122
Query: 362 RKKGAKLTEAEEA--IINEKRSRKTAKKYLSRQRLSKVEGGLEEQF 493
RK+ K + E+ ++ +KRS K KKYL RQ+ KVE LE+QF
Sbjct: 123 RKRNPKHAQKEDENDVLTKKRSEKVMKKYLERQKYGKVEQALEDQF 168
>UniRef50_Q5JR95 Cluster: Ribosomal protein S8; n=8;
Euteleostomi|Rep: Ribosomal protein S8 - Homo sapiens
(Human)
Length = 188
Score = 219 bits (534), Expect = 4e-56
Identities = 111/164 (67%), Positives = 125/164 (76%)
Frame = +2
Query: 2 ISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDT 181
ISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGG
Sbjct: 3 ISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGG----------- 51
Query: 182 GNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLG 361
C TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLG
Sbjct: 52 --------C-TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLG 102
Query: 362 RKKGAKLTEAEEAIINEKRSRKTAKKYLSRQRLSKVEGGLEEQF 493
RKKGAKLT EE I+N+KRS+K KKY R++ +K+ LEEQF
Sbjct: 103 RKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQF 146
>UniRef50_Q08069 Cluster: 40S ribosomal protein S8; n=21;
Eukaryota|Rep: 40S ribosomal protein S8 - Zea mays
(Maize)
Length = 221
Score = 193 bits (471), Expect = 2e-48
Identities = 104/173 (60%), Positives = 123/173 (71%), Gaps = 9/173 (5%)
Frame = +2
Query: 2 ISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALRLD 178
ISRD HKRRATGGK+ RKKRKYELGR ANTKL + + VR RGGN K+RALRLD
Sbjct: 3 ISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLD 62
Query: 179 TGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPL 358
TGN++WGSE TRKTRI+DVVYNASNNELVRT+TLVK+AIV VDA PF+QWY +HY + +
Sbjct: 63 TGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDI 122
Query: 359 GRKK---GAKLTEAE----EAIINE-KRSRKTAKKYLSRQRLSKVEGGLEEQF 493
GRKK AK AE EA E K+S +K R+ ++ +EEQF
Sbjct: 123 GRKKKTPAAKKDNAEGQEVEAAAEETKKSNHVTRKLEKRKEGRTLDPHIEEQF 175
>UniRef50_Q4N3P0 Cluster: 40S ribosomal protein S8; n=4;
Eukaryota|Rep: 40S ribosomal protein S8 - Theileria
parva
Length = 188
Score = 180 bits (439), Expect = 1e-44
Identities = 83/121 (68%), Positives = 101/121 (83%)
Frame = +2
Query: 2 ISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDT 181
ISRD HKRR TGG+ +KKRKYELGRP++NTKLG + + VR RGGN K+RALRLD+
Sbjct: 3 ISRDSRHKRRLTGGRYPVHKKKRKYELGRPSSNTKLGSKLVRKVRCRGGNLKFRALRLDS 62
Query: 182 GNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLG 361
GNF+WGS+ TRKTR++DVVYNAS+NELVRTKTLVKNAIV VD TPF+ W+++HY L LG
Sbjct: 63 GNFSWGSQNVTRKTRVMDVVYNASSNELVRTKTLVKNAIVTVDPTPFKLWFKTHYGLELG 122
Query: 362 R 364
+
Sbjct: 123 K 123
>UniRef50_P25204 Cluster: 40S ribosomal protein S8; n=19;
Eukaryota|Rep: 40S ribosomal protein S8 - Leishmania
major
Length = 220
Score = 167 bits (406), Expect = 1e-40
Identities = 86/164 (52%), Positives = 110/164 (67%)
Frame = +2
Query: 2 ISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDT 181
I R HKR+ TGGK RK+ K ELGR ANT+LG +R+ VR+RGGN K RALRLDT
Sbjct: 3 IVRSRLHKRKITGGKTKIHRKRMKAELGRLPANTRLGARRVSPVRARGGNFKIRALRLDT 62
Query: 182 GNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLG 361
GNFAW SE + R++DVVYNA++NELVRTKTLVKN IV VDA PF++WY HY + L
Sbjct: 63 GNFAWASEAIAHRVRLLDVVYNATSNELVRTKTLVKNCIVAVDAAPFKRWYAKHYGIDLD 122
Query: 362 RKKGAKLTEAEEAIINEKRSRKTAKKYLSRQRLSKVEGGLEEQF 493
K K T+A A+ EK+ RK+A + ++K L+ ++
Sbjct: 123 ADK--KSTKA--AVAAEKKGRKSAHAAADKYDVNKASPKLQREW 162
>UniRef50_Q6QP50 Cluster: Putative 40S ribosomal protein S8; n=1;
Zea mays|Rep: Putative 40S ribosomal protein S8 - Zea
mays (Maize)
Length = 245
Score = 149 bits (361), Expect = 3e-35
Identities = 70/120 (58%), Positives = 92/120 (76%), Gaps = 1/120 (0%)
Frame = +2
Query: 41 GKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALRLDTGNFAWGSECSTR 217
G P+++++ YELGR ANTKL + + VR RGGNTK+RALR DT N++WGSE TR
Sbjct: 113 GPFCPLQEEQGYELGRQPANTKLSSNKTVRRVRVRGGNTKWRALRFDTCNYSWGSEALTR 172
Query: 218 KTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRKKGAKLTEAEE 397
KTRI+DVVY A+NNELVRT+TLVK+AIV VDA PF+QWY +HY + +GRKK + + ++
Sbjct: 173 KTRILDVVYIATNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKVSVAKKDD 232
>UniRef50_UPI000049933B Cluster: conserved hypothetical protein;
n=3; Entamoeba histolytica HM-1:IMSS|Rep: conserved
hypothetical protein - Entamoeba histolytica HM-1:IMSS
Length = 237
Score = 138 bits (333), Expect = 9e-32
Identities = 64/115 (55%), Positives = 84/115 (73%)
Frame = +2
Query: 2 ISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDT 181
I+RD HKRRATGGK+ ++KK+K +GR ANT+LG R+H VR R G K RALRL+
Sbjct: 3 ITRDSRHKRRATGGKKNSMQKKKKNTMGRQPANTRLGAIRVHDVRCRYGIIKRRALRLEN 62
Query: 182 GNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHY 346
GNF+W S+ T+ T+I++VVYNAS+N+ VRT TLVK AI+ +D PFR W+ Y
Sbjct: 63 GNFSWASQSITKGTKILNVVYNASDNDFVRTNTLVKGAIIEIDPAPFRLWFLKFY 117
>UniRef50_Q7R1W8 Cluster: Ribosomal protein S8; n=1; Giardia lamblia
ATCC 50803|Rep: Ribosomal protein S8 - Giardia lamblia
ATCC 50803
Length = 174
Score = 112 bits (269), Expect = 5e-24
Identities = 59/117 (50%), Positives = 74/117 (63%), Gaps = 9/117 (7%)
Frame = +2
Query: 2 ISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKL---------GPQRIHLVRSRGGNT 154
I+ D +KR TG + KKRKY LGR ANTKL Q+I +R RGGN
Sbjct: 3 ITHDKMYKRSKTGAVQGKWHKKRKYNLGRQPANTKLIVKVTSKKNEGQKISTIRCRGGNI 62
Query: 155 KYRALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 325
K RALRL G+FAWGS + K RI+ VVYN+++NELVRT TLVK +V +D+ PF+
Sbjct: 63 KRRALRLSHGSFAWGSADISHKARILQVVYNSTSNELVRTNTLVKGCVVQIDSAPFK 119
>UniRef50_A6RAQ0 Cluster: Ribosomal protein S8; n=1; Ajellomyces
capsulatus NAm1|Rep: Ribosomal protein S8 - Ajellomyces
capsulatus NAm1
Length = 141
Score = 111 bits (267), Expect = 9e-24
Identities = 51/79 (64%), Positives = 62/79 (78%)
Frame = +2
Query: 2 ISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDT 181
ISRD HKR ATG KR+ RKKR +E GR ANT++GP+RIHLVR+RGGN K+R LRL++
Sbjct: 3 ISRDSRHKRSATGAKRSHYRKKRAFEKGRQPANTRIGPKRIHLVRTRGGNQKFRGLRLES 62
Query: 182 GNFAWGSECSTRKTRIIDV 238
GNF+WGSE RK R+I V
Sbjct: 63 GNFSWGSEGIARKVRVIVV 81
>UniRef50_Q8SWC9 Cluster: Ribosomal protein S8; n=1; Encephalitozoon
cuniculi|Rep: Ribosomal protein S8 - Encephalitozoon
cuniculi
Length = 173
Score = 101 bits (242), Expect = 9e-21
Identities = 48/102 (47%), Positives = 68/102 (66%)
Frame = +2
Query: 20 HKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWG 199
HKRR TG K RKKR G ++TK+G +++ VR RGGN KY+ALRLD G+F +
Sbjct: 9 HKRRKTGAKAVISRKKRNNRAGSQPSSTKIGERKVTPVRVRGGNRKYKALRLDMGHFKFI 68
Query: 200 SECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 325
+ R +++ VVY+ S+NELVRT TL K+++V + A PF+
Sbjct: 69 TTGKFRMAKLLQVVYHPSSNELVRTNTLTKSSVVKISAEPFK 110
>UniRef50_Q9AW20 Cluster: 40S ribosomal protein S8; n=1; Guillardia
theta|Rep: 40S ribosomal protein S8 - Guillardia theta
(Cryptomonas phi)
Length = 178
Score = 95.9 bits (228), Expect = 5e-19
Identities = 49/103 (47%), Positives = 69/103 (66%)
Frame = +2
Query: 2 ISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDT 181
I+R+ HKR++TGG ++ RKKR + GR +NTK+G + + +R RGG K RAL L
Sbjct: 3 INREGLHKRKSTGGLKSCWRKKRNHAKGRQPSNTKIGRRCVVKLRVRGGGVKTRALFLSY 62
Query: 182 GNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVD 310
GNF++ S T K +I+ V +N S+NELVRT TL K +IV +D
Sbjct: 63 GNFSFVSIQRTFKAKILSVAFNESSNELVRTNTLTKGSIVYLD 105
>UniRef50_Q3LVX9 Cluster: Ribosomal protein S8; n=1; Bigelowiella
natans|Rep: Ribosomal protein S8 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 176
Score = 78.2 bits (184), Expect = 1e-13
Identities = 37/101 (36%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Frame = +2
Query: 23 KRRATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALRLDTGNFAWG 199
K++ TGGK+ I KK+ + G NT L I + R RGGN K++A+ L G+F W
Sbjct: 3 KKKLTGGKKKKISKKKNHSKGNNPTNTVLRRANFIKMTRVRGGNFKFKAISLGKGSFQWK 62
Query: 200 SECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPF 322
+ ++ ++I+ V+YN +N +LV+ + L K I+ +D+ PF
Sbjct: 63 TMQLSKNSKILSVLYNQANLKLVQKRNLSKGTIIKIDSMPF 103
>UniRef50_A3CSQ2 Cluster: 30S ribosomal protein S8e; n=5;
Archaea|Rep: 30S ribosomal protein S8e - Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
Length = 125
Score = 66.1 bits (154), Expect = 4e-10
Identities = 35/92 (38%), Positives = 55/92 (59%)
Frame = +2
Query: 26 RRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGSE 205
R+ +GG+ + K++ E+GR A T +G +R +VR+ GGN K RALRL+ + +
Sbjct: 9 RKPSGGRYHTSQGKKRTEIGRAPAETHIGEERRRIVRTFGGNQKVRALRLEYATVSNPAT 68
Query: 206 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 301
T+KT+I V N+++ VR K L K AI+
Sbjct: 69 GETKKTKIEAVEANSADPNYVRRKLLTKGAII 100
>UniRef50_Q6L0D3 Cluster: 30S ribosomal protein S8e; n=7;
Archaea|Rep: 30S ribosomal protein S8e - Picrophilus
torridus
Length = 125
Score = 65.7 bits (153), Expect = 6e-10
Identities = 32/92 (34%), Positives = 52/92 (56%)
Frame = +2
Query: 26 RRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGSE 205
R+ +GGK P KR+YELGR T+LG + + +RS GGN+K+ LR D N +
Sbjct: 10 RKPSGGKLRPNHSKRRYELGREPTLTRLGDRELRKIRSYGGNSKFALLRCDYANVYNPKD 69
Query: 206 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 301
+TRK +I V N+++ V+ + + ++
Sbjct: 70 KTTRKVKINTVKENSADPHYVQRNIMNRGTVI 101
>UniRef50_Q9HJD0 Cluster: 30S ribosomal protein S8e; n=5;
Euryarchaeota|Rep: 30S ribosomal protein S8e -
Thermoplasma acidophilum
Length = 127
Score = 63.7 bits (148), Expect = 2e-09
Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Frame = +2
Query: 26 RRATGGKRAPIRKKRKYELGRPAANTKLGPQ-RIHLVRSRGGNTKYRALRLDTGNFAWGS 202
++ATGG RKKR++ELGR TKLG + ++R+ GGNTK +T N S
Sbjct: 10 KKATGGSLKQSRKKRRFELGREPTLTKLGTKTERKVIRTMGGNTKVILFTAETANVYDAS 69
Query: 203 ECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVD 310
E +K +II V N +N+ V+ + K ++ +
Sbjct: 70 EKKIKKAKIITVKANPANSHYVQRNIINKGTVIATE 105
>UniRef50_O58830 Cluster: 30S ribosomal protein S8e; n=6;
Archaea|Rep: 30S ribosomal protein S8e - Pyrococcus
horikoshii
Length = 127
Score = 58.0 bits (134), Expect = 1e-07
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Frame = +2
Query: 26 RRATGGKRAPIRKKRKYELGRPAANTKLGPQ-RIHLVRSRGGNTKYRALRLDTGNFAWGS 202
++ +GG+ RKKRK ELGR +NT++ Q + ++R+ GGN K R N +
Sbjct: 10 KKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNRKVRLTAAAYAN-VFDK 68
Query: 203 ECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 301
RK RII V+ N +N + R + K AI+
Sbjct: 69 SGKGRKVRIIRVLENPANRQFARRNIITKGAII 101
>UniRef50_Q0W1L5 Cluster: 30S ribosomal protein S8e; n=3;
Euryarchaeota|Rep: 30S ribosomal protein S8e -
Uncultured methanogenic archaeon RC-I
Length = 125
Score = 57.6 bits (133), Expect = 1e-07
Identities = 31/95 (32%), Positives = 46/95 (48%)
Frame = +2
Query: 26 RRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGSE 205
R+ATGG+ R KRK+ELGR +G Q++ ++ G +K R L+ D N
Sbjct: 9 RKATGGRLRLNRSKRKFELGRDFTIPVIGAQKLKVLNVTGNGSKVRVLKSDVVNVTDPKT 68
Query: 206 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVD 310
T+K ++ V N +N VR L K V +
Sbjct: 69 GKTQKVKMTTVTENPANKNYVRRNFLTKGTFVTTE 103
>UniRef50_Q980W3 Cluster: 30S ribosomal protein S8e; n=4;
Archaea|Rep: 30S ribosomal protein S8e - Sulfolobus
solfataricus
Length = 133
Score = 57.6 bits (133), Expect = 1e-07
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Frame = +2
Query: 26 RRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLV-RSRGGNTKYRALRLDTGNFAWGS 202
R+ TGG + R KRKYE+G P T L + I + R+ GGN K R T N +
Sbjct: 10 RKITGGLKGKHRDKRKYEIGNPPTFTTLSAEDIRIKDRTLGGNFKVRLKYTTTANVLDPA 69
Query: 203 ECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 313
+ +K +I++++ +N EL R +++ A + +A
Sbjct: 70 TNTAKKVKILEILETPANKELARRGIIIRGAKIRTEA 106
>UniRef50_Q5C1R4 Cluster: SJCHGC03085 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC03085 protein - Schistosoma
japonicum (Blood fluke)
Length = 120
Score = 54.4 bits (125), Expect = 1e-06
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 9/80 (11%)
Frame = +2
Query: 287 KNAIVVVDATPFRQWYESHYLLPLGR-----KKGAKLT--EAEEAIINEKRSRKTAKKYL 445
K+AIV + PFRQW+E+ YL LG KKG +T EE + +KRS+ KK+
Sbjct: 1 KSAIVQIGGAPFRQWFEAPYLKELGPPKVVCKKGPSVTPENPEEDFLLKKRSKSALKKFE 60
Query: 446 SRQRL--SKVEGGLEEQFHT 499
+RQ L + VE L+E+F T
Sbjct: 61 TRQALPQANVEESLKEEFVT 80
>UniRef50_Q8TV55 Cluster: 30S ribosomal protein S8e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S8e -
Methanopyrus kandleri
Length = 133
Score = 53.6 bits (123), Expect = 2e-06
Identities = 36/100 (36%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Frame = +2
Query: 17 WHKR---RATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALRLDT- 181
WH R + TGG+ P RKKRK+E+G P T +G +R + R GGN K + L+ T
Sbjct: 4 WHGRSLRKPTGGRIRPHRKKRKFEMGNPPTETLVGEERKLKERRGMGGNVK-KGLKFATH 62
Query: 182 GNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 301
N A + RI +VV N ++ R + K AI+
Sbjct: 63 ANVADPETGEVKCVRIEEVVKNPASQYYERHGVITKGAII 102
>UniRef50_P61300 Cluster: 30S ribosomal protein S8e; n=5;
Methanococcus|Rep: 30S ribosomal protein S8e -
Methanococcus maripaludis
Length = 128
Score = 52.0 bits (119), Expect = 7e-06
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Frame = +2
Query: 23 KRRATGGKRAPIRKKRKYELGRPAANTKLGPQ-RIHLVRSRGGNTKYRALRLDTGNFAWG 199
+R +TG K KK K E+GRPAA T++ + + +VR RG N K + + + N
Sbjct: 9 RRLSTGAKVWRAAKKHKREMGRPAAETQVSDKIKRKIVRCRGANLKVKLEKTNYANVFDQ 68
Query: 200 SECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 301
+ +K + +V+ N +N +R + K AI+
Sbjct: 69 ANKVCKKVVVTNVIDNKANKHYIRRNVMTKGAII 102
>UniRef50_A0RXG5 Cluster: Ribosomal protein S8E; n=2;
Thermoprotei|Rep: Ribosomal protein S8E - Cenarchaeum
symbiosum
Length = 129
Score = 50.8 bits (116), Expect = 2e-05
Identities = 28/91 (30%), Positives = 46/91 (50%)
Frame = +2
Query: 29 RATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGSEC 208
+ TGG+R P+R +RKYE+ R G Q + RG TK +D N A
Sbjct: 12 KLTGGRRHPLRTRRKYEIDRYPNEALSGAQETVTRKVRGKRTKTALKTIDFVNLA-VQGA 70
Query: 209 STRKTRIIDVVYNASNNELVRTKTLVKNAIV 301
+K++I+ V+ N +NN+ R + + A++
Sbjct: 71 KVKKSKIVKVLENPTNNDYRRRGVITRGAVL 101
>UniRef50_Q8ZTB8 Cluster: 30S ribosomal protein S8e; n=6;
Archaea|Rep: 30S ribosomal protein S8e - Pyrobaculum
aerophilum
Length = 131
Score = 48.8 bits (111), Expect = 7e-05
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Frame = +2
Query: 26 RRATGGKRAPIRKKRKYEL-GRPAANTKLGPQRIHLV-RSRGGNTKYRALRLDTGNFAWG 199
++ +GGK+ +RK +K L G P KLG +V R RGGN K R N
Sbjct: 13 KKPSGGKKRKVRKTKKKALGGGPPQIPKLGENDTRIVERVRGGNLKVRLREAKFANVYIP 72
Query: 200 SECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 301
E + K +II ++ +N + R +VK +++
Sbjct: 73 KERKSVKAKIISIISTPANPDFARRNFIVKGSVI 106
>UniRef50_Q9YDY0 Cluster: 30S ribosomal protein S8e; n=3;
Desulfurococcales|Rep: 30S ribosomal protein S8e -
Aeropyrum pernix
Length = 136
Score = 48.8 bits (111), Expect = 7e-05
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Frame = +2
Query: 23 KRRATGGKRAPIRK-KRKYELGRPAANTKLG---PQRIHLVRSRGGNTKYRALRLDTGNF 190
K++ +GGKR K KRKY GRP T L + VR+RGG+ K +A ++
Sbjct: 9 KKKPSGGKRRYYYKVKRKYAAGRPPTYTTLSAAEEEERKPVRARGGSYKIKAKKVAFAVV 68
Query: 191 AWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 301
+ RK RI+ +V ++ E R +VK A++
Sbjct: 69 SNPKTGEARKARILRIVETPAHREYARRGIIVKGAVI 105
>UniRef50_Q4SV68 Cluster: Chromosome undetermined SCAF13783, whole
genome shotgun sequence; n=2; Coelomata|Rep: Chromosome
undetermined SCAF13783, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 149
Score = 45.6 bits (103), Expect = 6e-04
Identities = 27/68 (39%), Positives = 33/68 (48%)
Frame = +3
Query: 177 ILETSHGDLNVQPARLVLLMLFIMPLTMNWCVPKPW*RMLLSWWMPHLSGSGMKATTCCH 356
+LETSHG LN P R M MP TM+W P+ W R + S L SGM+
Sbjct: 1 MLETSHGALNAAPERPGSSMWSTMPPTMSWLEPRHWSRTVSSLLTACLLDSGMRPIMPLL 60
Query: 357 SEGRKVPS 380
R+ PS
Sbjct: 61 LGARRAPS 68
Score = 31.9 bits (69), Expect = 8.3
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +2
Query: 347 LLPLGRKKGAKLTEAEEAIINEKRSRKTAKKYLSR 451
LL R+ + T EE ++N+KRS+KT KKY R
Sbjct: 59 LLLGARRAPSWYTPEEEEVLNKKRSKKTQKKYDER 93
>UniRef50_A7Q5T2 Cluster: Chromosome chr14 scaffold_54, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr14 scaffold_54, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 110
Score = 45.2 bits (102), Expect = 8e-04
Identities = 31/78 (39%), Positives = 43/78 (55%)
Frame = +2
Query: 260 ELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRKKGAKLTEAEEAIINEKRSRKTAKK 439
ELVRT+TLVKNAI+ Q Y HY L +G KK A T ++ E++ +K
Sbjct: 31 ELVRTQTLVKNAII--------QRYLQHYGLDIGCKKKASTTPRKK----ERKGNHVVRK 78
Query: 440 YLSRQRLSKVEGGLEEQF 493
RQ+ K++ +EEQF
Sbjct: 79 LEKRQQDHKLDPHIEEQF 96
>UniRef50_Q962J8 Cluster: PV1H14180_P; n=2; Plasmodium vivax|Rep:
PV1H14180_P - Plasmodium vivax
Length = 1011
Score = 36.3 bits (80), Expect = 0.39
Identities = 14/36 (38%), Positives = 27/36 (75%)
Frame = +2
Query: 368 KGAKLTEAEEAIINEKRSRKTAKKYLSRQRLSKVEG 475
+G KL EAE+ ++ E++SR A+K L ++ ++++EG
Sbjct: 586 EGGKLMEAEKKLLEEEKSRVDAEKKLMQEEMTRIEG 621
>UniRef50_Q9VL72 Cluster: CG5899-PA, isoform A; n=5; Diptera|Rep:
CG5899-PA, isoform A - Drosophila melanogaster (Fruit
fly)
Length = 844
Score = 35.5 bits (78), Expect = 0.68
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Frame = +2
Query: 200 SECSTRKT----RIIDVVYNASNNELVRTKTLV-KNAIVVVDATPFRQWYESHYLLPLGR 364
SE ST+ T ++ + AS EL KTL K A+ ++D PF W + L R
Sbjct: 174 SEMSTKMTGQRKKVFQFMNEASLIELQSVKTLSEKKALAIIDVRPFSDWSDLRQKLESIR 233
Query: 365 KKGAKLTEAEEAIINEKRS 421
G L A+E +IN++ +
Sbjct: 234 MSGDLLNYAQE-LINKQNT 251
>UniRef50_Q8MUP4 Cluster: Synaptonemal complex protein SYP-1; n=1;
Caenorhabditis elegans|Rep: Synaptonemal complex protein
SYP-1 - Caenorhabditis elegans
Length = 489
Score = 35.5 bits (78), Expect = 0.68
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Frame = +2
Query: 221 TRIIDVVYNASNNELVRTKTLV---KNAIVVVDATPFRQWYESHYLLPLGRKKGAKLTEA 391
T+I+ + Y A E + K L+ K +I+ + + +S+ + RKK +T
Sbjct: 279 TKILKLKYEARQQEDIENKKLIEERKRSIIELLRRKIAEKKKSNTVKGSDRKK---ITSL 335
Query: 392 EEAIINEKRSRKTAKKYLSRQRLSKVEGGLEEQ 490
++AI E+ + KK L + + SK E LEE+
Sbjct: 336 KKAIAKEQEKLEKGKKELEQLQSSKTESDLEEE 368
>UniRef50_Q7MRG0 Cluster: NIFEN2; n=1; Wolinella succinogenes|Rep:
NIFEN2 - Wolinella succinogenes
Length = 419
Score = 34.7 bits (76), Expect = 1.2
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = -2
Query: 403 DGFLSLSELGTFLPSEWQQVVAFIPLPERCGIHHDNSILYQG 278
+G ++ LG FLP E +V P+ ER G N ILY+G
Sbjct: 358 EGVIACERLGGFLPKETPWLVRGYPIFERIGTGLGNDILYEG 399
>UniRef50_Q2W531 Cluster: TPR repeat; n=3; Magnetospirillum|Rep: TPR
repeat - Magnetospirillum magneticum (strain AMB-1 /
ATCC 700264)
Length = 556
Score = 34.7 bits (76), Expect = 1.2
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +2
Query: 32 ATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSR 142
A G +RAP K YE R AA T+L P + +R R
Sbjct: 268 ALGAERAPANLKANYEKERDAAGTRLSPAELEALRGR 304
>UniRef50_Q9RZ17 Cluster: Amino acid ABC transporter, permease
protein; n=1; Deinococcus radiodurans|Rep: Amino acid
ABC transporter, permease protein - Deinococcus
radiodurans
Length = 484
Score = 33.9 bits (74), Expect = 2.1
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Frame = +3
Query: 87 ARLPTLSLVPNAST*SDPVVVTLNIVPCVLILETSHGDLNVQPARLVL---LMLFIMPLT 257
A P L ++P T PV+V ++ +L + G +N +P RLVL L + L
Sbjct: 23 APAPVLGVLPR--TLVRPVLVLAGVLG---LLACALGWVNFRPNRLVLGEGRTLAALALP 77
Query: 258 MNWCVPKPW*RMLLSWWMP 314
+ W +P W +L S W+P
Sbjct: 78 LWWALPAAWAALLASGWLP 96
>UniRef50_A5E7M6 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 620
Score = 33.9 bits (74), Expect = 2.1
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +2
Query: 311 ATPFRQWYESHYLLPLGRKKGAKLTEAE 394
ATPF Q + +HY+ L RKKG K+ E E
Sbjct: 374 ATPFYQTFLAHYIWQLKRKKGKKMKEDE 401
>UniRef50_UPI0000F2CAD6 Cluster: PREDICTED: hypothetical protein;
n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
protein - Monodelphis domestica
Length = 130
Score = 33.5 bits (73), Expect = 2.7
Identities = 27/73 (36%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Frame = +2
Query: 5 SRDHWHK--RRATGGKRAPIRKKRKYELG--RPAANTKLGPQRIHLVRSRGGNTKYRALR 172
SR H H R GG P+ G R A +LG R+ L R RGG + R R
Sbjct: 27 SRGHGHAPARPGGGGGGGPLHALAARVGGERRAARARRLG--RVGLPRGRGGGARARKER 84
Query: 173 LDTGNFAWGSECS 211
G A GS CS
Sbjct: 85 ARAGRLAGGSRCS 97
>UniRef50_Q2GJW1 Cluster: Phage uncharacterized protein; n=1;
Anaplasma phagocytophilum HZ|Rep: Phage uncharacterized
protein - Anaplasma phagocytophilum (strain HZ)
Length = 445
Score = 32.7 bits (71), Expect = 4.8
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = -3
Query: 180 VSRRRARYLVLPPRDLTKWMRWGPSLVLAAGRPNSYFLFLRMGARLPPVAL---LLCQ*S 10
V R +A Y L R L W P ++L R + Y L M +LP +A C+ S
Sbjct: 314 VYRAKANYTELKKRVLHLSEHWKPDVILIEERSSGYQLLQEMSKKLPVIAFNPKKYCKLS 373
Query: 9 RLI 1
RL+
Sbjct: 374 RLL 376
>UniRef50_Q11AT2 Cluster: Dihydroxy-acid and 6-phosphogluconate
dehydratase; n=40; Bacteria|Rep: Dihydroxy-acid and
6-phosphogluconate dehydratase - Mesorhizobium sp.
(strain BNC1)
Length = 580
Score = 32.7 bits (71), Expect = 4.8
Identities = 22/71 (30%), Positives = 36/71 (50%)
Frame = +2
Query: 173 LDTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLL 352
+D+G+ SEC R I+++V+ +L+ T V+NA +V AT H L+
Sbjct: 230 VDSGHQRMASECGRR---IVEMVWEDLTPDLIVTDASVRNAAIVAMATGCSTNAVVH-LI 285
Query: 353 PLGRKKGAKLT 385
+ R+ G LT
Sbjct: 286 AMARRAGVDLT 296
>UniRef50_Q7XEZ3 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 192
Score = 32.7 bits (71), Expect = 4.8
Identities = 25/55 (45%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +2
Query: 32 ATGGKRAPIRKKRKYELGR-PAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFA 193
A GGKR KK+ GR PA NT L P ++HL+ RGGN R L + G+ A
Sbjct: 28 ADGGKR----KKQSSCGGRIPALNT-LTPLKLHLLLERGGNGGQRLLGVRRGDGA 77
>UniRef50_Q6M9P1 Cluster: Putative uncharacterized protein; n=1;
Candidatus Protochlamydia amoebophila UWE25|Rep:
Putative uncharacterized protein - Protochlamydia
amoebophila (strain UWE25)
Length = 784
Score = 32.3 bits (70), Expect = 6.3
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 323 RQWYESHY-LLPLGRKKGAKLTEAEEAIINEKRSRKTAKKYLSRQRL 460
RQWY+ H +PLG G + +I E+ +++ KK+ Q++
Sbjct: 353 RQWYDPHKGAIPLGADLGPLTRNYLQEVIQERMTQRKVKKFQPNQKI 399
>UniRef50_Q1JT20 Cluster: Zinc finger domain containing protein,
putative precursor; n=1; Toxoplasma gondii RH|Rep: Zinc
finger domain containing protein, putative precursor -
Toxoplasma gondii RH
Length = 1100
Score = 32.3 bits (70), Expect = 6.3
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -2
Query: 442 VLLRCLSTAFFVYDGFLSLSELGTFLPSEWQQVVAFIPLPERCGIHHDNSIL 287
+ L C+ T F Y +L LS L T+ W ++ LPE G + +L
Sbjct: 947 LFLACMVTCLFSYHTYLMLSNLTTWESMAWHRISYLKDLPETKGSPFNRGVL 998
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 570,795,923
Number of Sequences: 1657284
Number of extensions: 12500383
Number of successful extensions: 34041
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 33047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34028
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29691847201
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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