Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_N19
         (500 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)              215   2e-56
SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)           54   7e-08
SB_47353| Best HMM Match : Neur_chan_memb (HMM E-Value=3.2)            31   0.53 
SB_30690| Best HMM Match : Neur_chan_memb (HMM E-Value=4.3e-09)        31   0.53 
SB_37792| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)                       28   3.8  
SB_42723| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0)              27   6.6  
SB_58821| Best HMM Match : RecR (HMM E-Value=1.6)                      27   6.6  
SB_42525| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_37037| Best HMM Match : PSI (HMM E-Value=0.061)                     27   8.7  

>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
          Length = 192

 Score =  215 bits (524), Expect = 2e-56
 Identities = 100/149 (67%), Positives = 120/149 (80%)
 Frame = +2

Query: 53  PIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGSECSTRKTRII 232
           P+R KRK+ELGRP ANTK+G +RIH VR+RGGN K+RA RLDT NF+WGSE  TRK RII
Sbjct: 4   PLRHKRKFELGRPPANTKIGTKRIHEVRTRGGNRKFRAFRLDTENFSWGSESCTRKARII 63

Query: 233 DVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRKKGAKLTEAEEAIINE 412
           DVVYNASNNELVRTKTLVKN IV VD+TPFRQWYE+HY +P+GRKK  + TE E+ I+N+
Sbjct: 64  DVVYNASNNELVRTKTLVKNCIVQVDSTPFRQWYEAHYAIPIGRKKTKQPTEEEQEILNK 123

Query: 413 KRSRKTAKKYLSRQRLSKVEGGLEEQFHT 499
           KRS    +K  +R+  +KV  G+EEQF T
Sbjct: 124 KRSNHCTRKLEARKANAKVAPGMEEQFVT 152


>SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)
          Length = 147

 Score = 54.0 bits (124), Expect = 7e-08
 Identities = 24/77 (31%), Positives = 46/77 (59%)
 Frame = +2

Query: 113 PQRIHLVRSRGGNTKYRALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKN 292
           P++I   ++ GG+TK +ALR++ G +   S+    +  I+ V+++ +N E +    +VK 
Sbjct: 37  PEKIKERKAYGGHTKIKALRVNKGVYTLKSQGVEVEAPILSVMHSFANKEHIERNVIVKG 96

Query: 293 AIVVVDATPFRQWYESH 343
           +IV VD  PF  W++ +
Sbjct: 97  SIVQVDNKPFEDWFQEY 113


>SB_47353| Best HMM Match : Neur_chan_memb (HMM E-Value=3.2)
          Length = 133

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +2

Query: 305 VDATPFRQWYESHYLLPLGRKKGAKLTEAEEAIINEKRSRKTAKKYLSRQRLSKVE 472
           + A   R+W+E         K+ A+L      +I+ +   K AK+Y+ +QRL  +E
Sbjct: 53  IKANNARKWWEKEMRANQTAKELARLASWRTWVISGETVEKKAKQYVFKQRLQDIE 108


>SB_30690| Best HMM Match : Neur_chan_memb (HMM E-Value=4.3e-09)
          Length = 193

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +2

Query: 305 VDATPFRQWYESHYLLPLGRKKGAKLTEAEEAIINEKRSRKTAKKYLSRQRLSKVE 472
           + A   R+W+E         K+ A+L      +I+ +   K AK+Y+ +QRL  +E
Sbjct: 87  IKANNARKWWEKEMRANQTAKELARLASWRTWVISGETVEKKAKQYVFKQRLQDIE 142


>SB_37792| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 230

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +2

Query: 212 TRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 325
           T++ +I D++ N   N  VR +TL+ NA +++D   F+
Sbjct: 18  TKRKKIADILSNEIRN--VRERTLILNAALIIDICVFK 53


>SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2537

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 29  RATGGKRAPIRKKRKYELGRPAANTKLGP 115
           R  GG R P+++   +E  +P+ N + GP
Sbjct: 769 RRGGGSRVPVKRSSSFENRKPSPNRRRGP 797


>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
          Length = 1327

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +2

Query: 320  FRQWYESHYLLPLGRKKGAKLTEAEEAIINEKRSRKTAKKYLSRQRLSKVE 472
            F Q    H++    +KKG  + +   A+   +R  + AK+ LS Q  ++VE
Sbjct: 930  FDQNVMEHFIKLYKKKKGKNIRKDNRAVQKLRREVEKAKRALSTQHQARVE 980


>SB_42723| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 9/20 (45%), Positives = 17/20 (85%)
 Frame = +1

Query: 400 HHKRKTQSKDSEEVPEQAAP 459
           H ++KT+++++E+VPE A P
Sbjct: 129 HEEKKTKARNNEKVPEGAVP 148


>SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0)
          Length = 2007

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 297  LSWWMPHLSGSGMKATTCCHSEGRKVPSSLRL 392
            L+ WM HL    +     CH+EGR   + L L
Sbjct: 1881 LTIWMKHLENWPLHMPIVCHAEGRTTAAILLL 1912


>SB_58821| Best HMM Match : RecR (HMM E-Value=1.6)
          Length = 223

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +2

Query: 335 ESHYLL--PLGRKKGAKLTEAEEAIINEKRSR 424
           E H+LL  PL +KK  KLT+  E I N K +R
Sbjct: 125 EDHFLLHCPLYKKKREKLTKTMEEIENVKFTR 156


>SB_42525| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -2

Query: 139 GSD*VDALGTKLSVGSRAT*LILPLLTNGRTFAARSPPLMPMITTD 2
           GS  +D L  +L+ G R T   +  L +GR  +  SPPL+  I  D
Sbjct: 15  GSGDLDYLERQLNCGLRTT--AVTWLHSGRVVSRNSPPLLGHIVND 58


>SB_37037| Best HMM Match : PSI (HMM E-Value=0.061)
          Length = 284

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 222 LVLLMLFIMPLTMNWCVPKPW*RMLLSW 305
           LVLL+L ++ LT   CV   W   + SW
Sbjct: 213 LVLLLLCVVGLTTTVCVANEWHFKIYSW 240


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,607,335
Number of Sequences: 59808
Number of extensions: 386806
Number of successful extensions: 821
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)