Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_N19
         (500 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...   305   2e-85
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   3.1  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   4.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   4.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   4.1  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   5.5  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   7.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.5  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score =  305 bits (748), Expect = 2e-85
 Identities = 139/166 (83%), Positives = 152/166 (91%)
 Frame = +2

Query: 2   ISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDT 181
           ISRDHWHKRRATGGKR PIRKKRK+ELGRPAANTKLGPQRIH VR+RGGN KYRALRLDT
Sbjct: 3   ISRDHWHKRRATGGKRKPIRKKRKFELGRPAANTKLGPQRIHTVRTRGGNKKYRALRLDT 62

Query: 182 GNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLG 361
           GNF+WGSEC+TRKTRIIDVVYNASNNELVRTKTLVKNAIV +DATPFRQWYE HY+LPLG
Sbjct: 63  GNFSWGSECTTRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDATPFRQWYEGHYVLPLG 122

Query: 362 RKKGAKLTEAEEAIINEKRSRKTAKKYLSRQRLSKVEGGLEEQFHT 499
           RK+GAKLTEAEE ++N+KRS+K   KY +RQR +KVE  LEEQF T
Sbjct: 123 RKRGAKLTEAEEEVLNKKRSKKAEAKYKARQRFAKVEPALEEQFAT 168


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 485 PPDHPLPWTGAACSGTS 435
           PP+ P+P   +AC G++
Sbjct: 180 PPEPPVPTVTSACVGSA 196


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 247 IINNINNTSLAG 212
           +INN NNTS+ G
Sbjct: 488 VINNRNNTSMKG 499


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +3

Query: 225 VLLMLFIMPLTMNWCVPKPW*RMLLSWWMPHL 320
           VL + F  P T N     PW R +   WMP L
Sbjct: 333 VLNVHFRSPSTHNM---SPWVRQVFLNWMPRL 361


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 227 YESCGLNIQIPMRSFQYQD 171
           YE CGL  + PM SFQ  D
Sbjct: 653 YE-CGLRFEDPMISFQPGD 670


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = +3

Query: 225 VLLMLFIMPLTMNWCVPKPW 284
           +L+   +MPL + W +   W
Sbjct: 85  LLVTFLMMPLEIGWAITVSW 104


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +2

Query: 215 RKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQ 328
           RK  + +VVY    N + +    V + I ++ A+P ++
Sbjct: 358 RKRPMHNVVYRPGENPVTQRLPAVLSRIGIILASPLKR 395


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 210 QPARLVLLMLFIMPLTMNW 266
           QP  L+ L+   MPL  NW
Sbjct: 491 QPEPLIELIEHWMPLLPNW 509


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 365 KKGAKLTEAEEAIINEKRSRKTAKKY 442
           KKG+ +T+    +I  + + K  K+Y
Sbjct: 517 KKGSFVTQYVGEVITNEEAEKRGKEY 542


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,933
Number of Sequences: 438
Number of extensions: 3477
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)