Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_N16
         (539 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B)       75   3e-14
At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B)       75   3e-14
At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B)       75   3e-14
At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A)       71   4e-13
At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)...    68   4e-12
At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)...    68   4e-12
At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)...    63   1e-10
At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)...    62   2e-10
At3g47330.1 68416.m05144 hypothetical protein contains Pfam prof...    28   3.5  
At3g47460.1 68416.m05161 SMC2-like condensin, putative similar t...    28   4.6  
At3g28510.1 68416.m03561 AAA-type ATPase family protein contains...    27   8.0  

>At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B)
          Length = 115

 Score = 74.9 bits (176), Expect = 3e-14
 Identities = 35/65 (53%), Positives = 50/65 (76%)
 Frame = -1

Query: 482 MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 303
           M+ VAAYLLAVL GKASP +AD++ IL SVG E +  +++ ++ E+ GK++ ELI AGR 
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 302 KLSSM 288
           KL+S+
Sbjct: 61  KLASV 65


>At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B)
          Length = 115

 Score = 74.9 bits (176), Expect = 3e-14
 Identities = 35/65 (53%), Positives = 50/65 (76%)
 Frame = -1

Query: 482 MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 303
           M+ VAAYLLAVL GKASP +AD++ IL SVG E +  +++ ++ E+ GK++ ELI AGR 
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 302 KLSSM 288
           KL+S+
Sbjct: 61  KLASV 65


>At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B)
          Length = 115

 Score = 74.9 bits (176), Expect = 3e-14
 Identities = 35/65 (53%), Positives = 50/65 (76%)
 Frame = -1

Query: 482 MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 303
           M+ VAAYLLAVL GKASP +AD++ IL SVG E +  +++ ++ E+ GK++ ELI AGR 
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 302 KLSSM 288
           KL+S+
Sbjct: 61  KLASV 65


>At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A)
          Length = 115

 Score = 71.3 bits (167), Expect = 4e-13
 Identities = 33/65 (50%), Positives = 48/65 (73%)
 Frame = -1

Query: 482 MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 303
           M+ VAA+LLAVL GKASP   D++ IL SVG E +  +++ ++ E+ GK++ ELI AGR 
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 302 KLSSM 288
           KL+S+
Sbjct: 61  KLASV 65


>At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)
           acidic ribosomal protein P2, maize,  PIR:S54179
          Length = 111

 Score = 68.1 bits (159), Expect = 4e-12
 Identities = 29/65 (44%), Positives = 50/65 (76%)
 Frame = -1

Query: 482 MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 303
           M+  AA+LLAVLGG A+P+A +++ I+ +VG + D E ++ ++ E++GK++ ELI +GR 
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 302 KLSSM 288
           KL+S+
Sbjct: 61  KLASV 65


>At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)
           acidic ribosomal protein P2, maize,  PIR:S54179
          Length = 111

 Score = 68.1 bits (159), Expect = 4e-12
 Identities = 29/65 (44%), Positives = 50/65 (76%)
 Frame = -1

Query: 482 MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 303
           M+  AA+LLAVLGG A+P+A +++ I+ +VG + D E ++ ++ E++GK++ ELI +GR 
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 302 KLSSM 288
           KL+S+
Sbjct: 61  KLASV 65


>At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)
           acidic ribosomal protein P2, Parthenium
           argentatum,SWISSPROT:RLA2_PARAR
          Length = 114

 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 30/65 (46%), Positives = 44/65 (67%)
 Frame = -1

Query: 482 MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 303
           M+ VAAYLLA L G  +P+ AD++KI+ SVG E D EK+    S +  ++V ELI  GR 
Sbjct: 1   MKVVAAYLLAKLSGNENPSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIAVGRE 60

Query: 302 KLSSM 288
           K++++
Sbjct: 61  KMAAL 65


>At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)
           similar to acidic ribosomal protein P2b (rpp2b)
           GB:U62753 GI:2431770 from [Zea mays]
          Length = 115

 Score = 62.1 bits (144), Expect = 2e-10
 Identities = 30/65 (46%), Positives = 44/65 (67%)
 Frame = -1

Query: 482 MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 303
           M+ +AA+LLA LGG  +P + D++KIL SVG E D  K+  + S +   +V ELI AGR 
Sbjct: 1   MKVIAAFLLAKLGGNENPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGRE 60

Query: 302 KLSSM 288
           K+S++
Sbjct: 61  KMSAL 65


>At3g47330.1 68416.m05144 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 664

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = -1

Query: 458 LAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAG 309
           L +  G   PA   +E  LS    E+D E  KK IS+   K+V   +E+G
Sbjct: 588 LVIHSGIRDPAPPTIES-LSDGSDESDEEDKKKQISKKKRKHVGPTLESG 636


>At3g47460.1 68416.m05161 SMC2-like condensin, putative similar to
            SMC2-like condensin (TITAN3) [Arabidopsis thaliana]
            GI:14279543; contains Pfam profiles PF02483: SMC family
            C-terminal domain, PF02463: RecF/RecN/SMC N terminal
            domain
          Length = 1171

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -1

Query: 389  IEADSEKLKKVISELNGKNVEEL 321
            IE D  K+KKVI EL+ K  E L
Sbjct: 1003 IETDKSKIKKVIEELDEKKKETL 1025


>At3g28510.1 68416.m03561 AAA-type ATPase family protein contains
          Pfam profile: PF00004 ATPase family
          Length = 530

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 4  VSSFFFFFLIYHQYIS*KHIRRHV 75
          V+SF FF+ IY QY+   H R +V
Sbjct: 15 VTSFMFFWAIYKQYVP-AHFRAYV 37


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,252,527
Number of Sequences: 28952
Number of extensions: 123687
Number of successful extensions: 354
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)