Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_N15
(546 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.45
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac... 27 1.8
SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase |Schizosaccharo... 26 3.2
SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr 3|... 26 4.2
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 25 5.5
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar... 25 7.3
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc... 25 7.3
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom... 25 9.6
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch... 25 9.6
SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces... 25 9.6
>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 689
Score = 29.1 bits (62), Expect = 0.45
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +3
Query: 315 WYPTWSEEEQDRLVLAVSEMDAEFGTKLQDVMANGTEALY 434
++ TW +++ D L V +D KL ++ N +A+Y
Sbjct: 60 FHSTWQKKKHDDLTATVPVIDFRKNQKLTSIVVNAIQAIY 99
>SPCC777.14 |prp4||serine/threonine protein kinase
Prp4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 477
Score = 27.1 bits (57), Expect = 1.8
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = +3
Query: 111 PGLTSEAQLRYLLQWFGEFSE--LQREDFL 194
PG T+ LRY+++ G+FS L+R FL
Sbjct: 361 PGRTNNQMLRYMMECKGKFSHKMLKRSQFL 390
>SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +3
Query: 156 FGEFSELQREDFLPVLAAARRHEPDQLA 239
FGE SE RED+L L +Q A
Sbjct: 78 FGEMSEFHREDYLDFLKRVTPDNAEQFA 105
>SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 340
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/60 (21%), Positives = 30/60 (50%)
Frame = -3
Query: 325 VGYQSLNNLIRH*NKLTGLSSQHMLAIAIASWSGSCLRAAASTGRKSSLCNSLNSPNHWR 146
VG +++ N+ GL S+ ++ + +G C ++ + SLC +L + N+++
Sbjct: 81 VGQDKFADMLLESNEKAGLRSE--FSVDPTTPTGVCAVVLSNNNKNRSLCTNLGAANNYK 138
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 453 YPTYVENGEACKEDTVEN--SVGHGVSQENIPV 545
YPTY+ NG + + N +V +G + IPV
Sbjct: 354 YPTYMSNGRSANQSPRNNPQNVNNGSTPIQIPV 386
>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 495 YLLYTLPHFQHK*GKNLFY 439
YL+YT HFQ K LF+
Sbjct: 49 YLIYTGEHFQEKQATELFF 67
>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -1
Query: 159 QTIGGDTLAVLQKLGLVLT 103
+TI GD +AVL+KLG + T
Sbjct: 62 KTIEGDVVAVLKKLGYLKT 80
>SPBC18H10.09 |||zinc finger protein, zf-CHY
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 24.6 bits (51), Expect = 9.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 414 NGTEALYNGKKDFYPTYVENGEACKEDTVEN 506
+G+E L+N +K Y + G KED ++N
Sbjct: 105 SGSEQLFNDEKPKKIIYSKGGNDGKEDDLQN 135
>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 891
Score = 24.6 bits (51), Expect = 9.6
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Frame = -3
Query: 523 TP*PTEFSTVSSLHASPFS----T*VG*KSFLPLYSASVPFAITS 401
TP T FS+ + H SPFS T +G ++ + S+S P A +S
Sbjct: 699 TPNSTSFSSPPTPHRSPFSGQAFTGMGLSNYSLMSSSSFPSAQSS 743
>SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 24.6 bits (51), Expect = 9.6
Identities = 18/66 (27%), Positives = 25/66 (37%)
Frame = +3
Query: 201 LAAARRHEPDQLAIAMASMCCEDKPVSLFQCRIKLFNDWYPTWSEEEQDRLVLAVSEMDA 380
L A +RH DQ KP + PT S EE+D + + D
Sbjct: 6 LLALQRHFEDQFGHIEGLQPVSAKPSETAFNSDASEKEQSPTTSNEEEDAISDMEDKEDV 65
Query: 381 EFGTKL 398
FG+K+
Sbjct: 66 SFGSKI 71
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,187,581
Number of Sequences: 5004
Number of extensions: 43370
Number of successful extensions: 108
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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