Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_N15
(546 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0340 - 17725866-17725884,17726046-17726326,17726842-177269... 34 0.085
01_06_0482 - 29672720-29673854,29673941-29676267 32 0.34
12_01_0243 + 1816725-1816883,1816992-1817114,1817227-1817313,181... 30 1.4
11_01_0246 + 1887680-1887838,1887942-1888064,1888177-1888263,188... 30 1.4
03_06_0089 - 31565454-31565517,31565594-31565618,31565743-315659... 29 3.2
03_01_0219 + 1731267-1731728,1732148-1732235,1732330-1732417,173... 29 3.2
02_02_0096 - 6727844-6727957,6728149-6728247,6728332-6728410,672... 28 5.6
06_03_0032 - 15697530-15697669,15699215-15699437,15699823-156999... 27 9.8
05_01_0411 + 3243025-3243092,3243348-3243496,3243740-3243872,324... 27 9.8
>12_02_0340 -
17725866-17725884,17726046-17726326,17726842-17726928,
17727018-17727113,17728484-17728585,17728720-17728762,
17728834-17728952,17729348-17729444,17730153-17730214,
17730370-17730432,17730847-17730949,17731402-17731497,
17731594-17731742,17732356-17732529,17733078-17733156,
17733807-17733913,17733994-17734062,17734879-17735043,
17735206-17735703
Length = 802
Score = 33.9 bits (74), Expect = 0.085
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Frame = +3
Query: 246 MASMCCEDKPVSLFQCRIKLFNDWYPTWSEEEQDRLVLAVSEMDAEFGTKLQDVMANGTE 425
+ S +KPV+ I+ D T +EE++ +L +EM+A TK ++++A+ E
Sbjct: 562 LKSRIVAEKPVAECAKLIEELEDQISTIIQEEREERILRKAEMEA---TKAENMIAHKDE 618
Query: 426 ALYNGKKDFYPTYVEN---GEACKEDTVENSVGHGV 524
K+ ++ T E +A KE T + GV
Sbjct: 619 IYSRPKRTWFATEKEKKLLAKAAKESTSQGKSNSGV 654
>01_06_0482 - 29672720-29673854,29673941-29676267
Length = 1153
Score = 31.9 bits (69), Expect = 0.34
Identities = 26/64 (40%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = -3
Query: 313 SLNNLIRH*NKLTGLSSQHMLAIAIASWSGSCLRAAASTGRKSSLC-NSLNSPNH-WRRY 140
S+ N RH +L SS L + +S S S AAAST SS SL + +H RR
Sbjct: 56 SVANQARHKPRLKPSSSTRKLLPSASSSSSSSAAAAASTSSSSSFWKKSLTAISHLGRRR 115
Query: 139 LSCA 128
L CA
Sbjct: 116 LDCA 119
>12_01_0243 +
1816725-1816883,1816992-1817114,1817227-1817313,
1817442-1817546,1817744-1817905,1818473-1818508,
1818637-1818708,1819285-1819562,1820275-1820509
Length = 418
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Frame = +3
Query: 123 SEAQLRYLL--QWFGEFSE-LQREDFLPVLAAARRHEPDQLAIAMA-SMCCEDK 272
S A L+YLL + GE +E + +ED +PVL A++ H + ++I A + ED+
Sbjct: 86 STANLKYLLVPYYLGEMTERVAQEDRIPVLKASQDHLKEFISICEALELISEDE 139
>11_01_0246 +
1887680-1887838,1887942-1888064,1888177-1888263,
1888401-1888505,1888693-1888854,1889429-1889464,
1889594-1889665,1890270-1890414,1891213-1891505
Length = 393
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Frame = +3
Query: 123 SEAQLRYLL--QWFGEFSE-LQREDFLPVLAAARRHEPDQLAIAMA-SMCCEDK 272
S A L+YLL + GE +E + +ED +PVL A++ H + ++I A + ED+
Sbjct: 86 STANLKYLLVPYYLGEMTERVAQEDRIPVLKASQDHLKEFISICEALELISEDE 139
>03_06_0089 -
31565454-31565517,31565594-31565618,31565743-31565927,
31566302-31566405,31567148-31567366,31567721-31567903
Length = 259
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +3
Query: 387 GTKLQDVMANGT---EALYNGKKDFYPTYVENGEACKE 491
G L+D+ AN T EAL NGK Y + E C+E
Sbjct: 119 GVSLKDLAANATPYEEALSNGKPTVVEFYADWCEVCRE 156
>03_01_0219 +
1731267-1731728,1732148-1732235,1732330-1732417,
1732528-1732573,1732687-1732785,1734363-1734431,
1735706-1736036,1736123-1736256,1736400-1737251
Length = 722
Score = 28.7 bits (61), Expect = 3.2
Identities = 20/62 (32%), Positives = 26/62 (41%)
Frame = +3
Query: 267 DKPVSLFQCRIKLFNDWYPTWSEEEQDRLVLAVSEMDAEFGTKLQDVMANGTEALYNGKK 446
+ P+ R KL ND Y T + E D +L + M + A EAL KK
Sbjct: 237 EHPMDFSTIREKLLNDSYTTLEQFENDVFLLTSNAMSYNSDDTVYYRQARSIEAL--AKK 294
Query: 447 DF 452
DF
Sbjct: 295 DF 296
>02_02_0096 -
6727844-6727957,6728149-6728247,6728332-6728410,
6728534-6728634,6728740-6728808,6729180-6729220,
6729992-6730836,6730924-6731027,6731479-6732354
Length = 775
Score = 27.9 bits (59), Expect = 5.6
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +3
Query: 351 LVLAVSEMDAEFGTKLQDVMANGTEALYNGKKDFYPTYVENGEACKEDTVEN 506
+ L +E+D +F LQD++ GT L PTY E E CK E+
Sbjct: 438 MYLVPTEVDPQFAQNLQDLLLEGTALL--------PTY-EKPEICKHTASED 480
>06_03_0032 -
15697530-15697669,15699215-15699437,15699823-15699929,
15700047-15700224,15700393-15700455,15700474-15700602,
15701211-15701430,15702162-15702262,15702954-15703062,
15705169-15705290,15705473-15705515,15705848-15705903,
15705983-15706089,15706167-15706342,15706507-15706618,
15706711-15706759,15707184-15707276,15707452-15707571,
15707686-15707787,15709442-15709540,15710103-15710237,
15710421-15710499,15710747-15710822,15710904-15710993,
15711139-15711217,15711304-15711338,15711457-15711531,
15712628-15713375
Length = 1221
Score = 27.1 bits (57), Expect = 9.8
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 369 EMDAEFGTKLQDVMANGTEALYNGKK 446
EM+ +F + +D+M +G A+ +GKK
Sbjct: 462 EMELDFASDEEDIMISGAPAMPDGKK 487
>05_01_0411 +
3243025-3243092,3243348-3243496,3243740-3243872,
3244740-3244860,3245065-3245181,3245303-3245389,
3245941-3246000,3246097-3246174,3246587-3246658,
3246767-3246925
Length = 347
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/66 (18%), Positives = 29/66 (43%)
Frame = +3
Query: 336 EEQDRLVLAVSEMDAEFGTKLQDVMANGTEALYNGKKDFYPTYVENGEACKEDTVENSVG 515
EE++ ++ ++ E L+D+ G+ ++ K P + C+ + +G
Sbjct: 127 EEEEEQIIKGDDVIVELDASLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHRQIG 186
Query: 516 HGVSQE 533
G+ Q+
Sbjct: 187 PGMYQQ 192
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,853,295
Number of Sequences: 37544
Number of extensions: 274150
Number of successful extensions: 698
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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