Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_N15
         (546 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1227| Best HMM Match : Aldose_epim (HMM E-Value=0)                  52   4e-07
SB_2816| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.9  
SB_10334| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_1227| Best HMM Match : Aldose_epim (HMM E-Value=0)
          Length = 326

 Score = 51.6 bits (118), Expect = 4e-07
 Identities = 24/86 (27%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
 Frame = +3

Query: 132 QLRYLLQWFGEFSELQREDFLPVLAA--ARRHEPDQLAIAMASMCCEDKPVSLFQCRIKL 305
           ++R L+ WF  ++  QR  F+ ++      RH    L  A+ SM  +DK +  F+C++++
Sbjct: 7   RMRTLVSWFDAWTPYQRVSFMDLMVTKVVPRHVCS-LYNALESMTLQDKRLDTFECQLRM 65

Query: 306 FNDWYPTWSEEEQDRLVLAVSEMDAE 383
           F+ W+  WS+ +++  V  + ++D E
Sbjct: 66  FSKWFAEWSDTQRNIFVDELEKVDYE 91



 Score = 29.9 bits (64), Expect = 1.4
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 93  SLTMSAPGL-TSEAQLRYLLQWFGEFSELQREDFLPVL 203
           S+T+    L T E QLR   +WF E+S+ QR  F+  L
Sbjct: 48  SMTLQDKRLDTFECQLRMFSKWFAEWSDTQRNIFVDEL 85


>SB_2816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 503

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 213 RRHEPDQLAIAMASMCCEDKPVSLFQCRIKLFNDWYPTWSEEE 341
           R++ PD+L    + +CCE+KP     C   + + W+P  S E+
Sbjct: 188 RKYTPDELL--RSDVCCEEKPSKQHNCS-DIRDYWWPGLSYEK 227


>SB_10334| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 267 DKPVSLFQCRIKLFNDWYPTWSEEEQ 344
           D  ++ F+  I   +DWY  WS+ +Q
Sbjct: 54  DNRITAFESSIMPVSDWYGRWSDSQQ 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,174,508
Number of Sequences: 59808
Number of extensions: 326817
Number of successful extensions: 666
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)