Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_N15
(546 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g30810.1 68417.m04365 serine carboxypeptidase S10 family prot... 28 3.5
At3g14240.1 68416.m01803 subtilase family protein contains simil... 28 3.5
At3g04430.1 68416.m00469 no apical meristem (NAM) family protein... 28 4.7
At5g42230.1 68418.m05140 serine carboxypeptidase S10 family prot... 27 6.2
At1g72320.3 68414.m08362 pumilio/Puf RNA-binding domain-containi... 27 6.2
At1g72320.2 68414.m08361 pumilio/Puf RNA-binding domain-containi... 27 6.2
At1g72320.1 68414.m08363 pumilio/Puf RNA-binding domain-containi... 27 6.2
At5g45640.1 68418.m05612 subtilase family protein contains Pfam ... 27 8.2
At5g42240.1 68418.m05142 serine carboxypeptidase S10 family prot... 27 8.2
At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar ... 27 8.2
At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar ... 27 8.2
At4g37200.1 68417.m05266 thioredoxin family protein contains Pfa... 27 8.2
At2g24010.1 68415.m02868 serine carboxypeptidase S10 family prot... 27 8.2
>At4g30810.1 68417.m04365 serine carboxypeptidase S10 family protein
similar to serine-type carboxypeptidase (SP:P55748)
[Hordeum vulgare]
Length = 479
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 120 TSEAQLRYLLQWFGEFSELQREDFLPVLAAARRHEPDQLAIAM 248
T+E L++LL+W F E + DF V + H QL+ A+
Sbjct: 157 TAEDSLKFLLKWVERFPEYKGRDFYIVGESYAGHYIPQLSEAI 199
>At3g14240.1 68416.m01803 subtilase family protein contains
similarity to SBT1 GI:1771160 from [Lycopersicon
esculentum]
Length = 775
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +2
Query: 113 RPNF*STAKVSPPMVWGVQ*VAERGFPTSACSSTQA*TRPACNCY 247
RP+F P+ W Q +A + FP SAC+ R C Y
Sbjct: 144 RPSFDDRGLGPVPIKWKGQCIASQDFPESACNRKLVGARFFCGGY 188
>At3g04430.1 68416.m00469 no apical meristem (NAM) family protein
similar to CUC1 (GP:12060422) {Arabidopsis thaliana}
Length = 198
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3
Query: 468 ENGEACKEDTVENS 509
ENG AC++DT ENS
Sbjct: 181 ENGHACEQDTAENS 194
>At5g42230.1 68418.m05140 serine carboxypeptidase S10 family protein
similar to Serine carboxypeptidase II chains A and B
(SP:P08819) (EC 3.4.16.6) [Triticum aestivum (Wheat)]
Length = 469
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 135 LRYLLQWFGEFSELQREDFLPVLAAARRHEPDQLAIAMAS 254
L +LL+WF +F EL+ D + H QLA A+ S
Sbjct: 151 LVFLLRWFDKFPELKSHDLFLTGESYAGHYIPQLADAILS 190
>At1g72320.3 68414.m08362 pumilio/Puf RNA-binding domain-containing
protein contains Pfam profile: PF00806 Pumilio-family
RNA binding domains (aka PUM-HD, Pumilio homology
domain) (5 copies)
Length = 731
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +2
Query: 236 CNCYGQHVL*R*TC 277
CNCYG HVL R C
Sbjct: 195 CNCYGSHVLRRLLC 208
>At1g72320.2 68414.m08361 pumilio/Puf RNA-binding domain-containing
protein contains Pfam profile: PF00806 Pumilio-family
RNA binding domains (aka PUM-HD, Pumilio homology
domain) (5 copies)
Length = 731
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +2
Query: 236 CNCYGQHVL*R*TC 277
CNCYG HVL R C
Sbjct: 195 CNCYGSHVLRRLLC 208
>At1g72320.1 68414.m08363 pumilio/Puf RNA-binding domain-containing
protein contains Pfam profile: PF00806 Pumilio-family
RNA binding domains (aka PUM-HD, Pumilio homology
domain) (5 copies)
Length = 753
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +2
Query: 236 CNCYGQHVL*R*TC 277
CNCYG HVL R C
Sbjct: 217 CNCYGSHVLRRLLC 230
>At5g45640.1 68418.m05612 subtilase family protein contains Pfam
domain, PF00082: Subtilase family; contains Pfam domain,
PF02225: protease associated (PA) domain
Length = 754
Score = 27.1 bits (57), Expect = 8.2
Identities = 14/55 (25%), Positives = 21/55 (38%)
Frame = +3
Query: 297 IKLFNDWYPTWSEEEQDRLVLAVSEMDAEFGTKLQDVMANGTEALYNGKKDFYPT 461
I L +PTWS ++ + M E +QD + G + F PT
Sbjct: 550 IALLKSMHPTWSSAAIRSALMTTASMTNEDNEPIQDYDGSPANPFALGSRHFRPT 604
>At5g42240.1 68418.m05142 serine carboxypeptidase S10 family protein
similar to Serine carboxypeptidase II-3 precursor
(SP:P52711) (CP-MII.3. [Hordeum vulgare]
Length = 473
Score = 27.1 bits (57), Expect = 8.2
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 120 TSEAQLRYLLQWFGEFSELQREDFLPVLAAARRHEPDQLAIAMAS 254
T+ L +LL+WF +F +L+ D + H QLA A+ S
Sbjct: 150 TANDMLVFLLRWFEKFPKLKSRDLFLTGESYAGHYIPQLADAILS 194
>At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1072
Score = 27.1 bits (57), Expect = 8.2
Identities = 15/64 (23%), Positives = 29/64 (45%)
Frame = +3
Query: 303 LFNDWYPTWSEEEQDRLVLAVSEMDAEFGTKLQDVMANGTEALYNGKKDFYPTYVENGEA 482
+F+ T ++E+ DR++ E AE K++ + + + DFY +N +
Sbjct: 671 VFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIQFKMDDSADFYDFDDDNKDE 730
Query: 483 CKED 494
K D
Sbjct: 731 SKVD 734
>At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1069
Score = 27.1 bits (57), Expect = 8.2
Identities = 15/64 (23%), Positives = 29/64 (45%)
Frame = +3
Query: 303 LFNDWYPTWSEEEQDRLVLAVSEMDAEFGTKLQDVMANGTEALYNGKKDFYPTYVENGEA 482
+F+ T ++E+ DR++ E AE K++ + + + DFY +N +
Sbjct: 671 VFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIQFKMDDSADFYDFDDDNKDE 730
Query: 483 CKED 494
K D
Sbjct: 731 SKVD 734
>At4g37200.1 68417.m05266 thioredoxin family protein contains Pfam
profile: PF00085 Thioredoxin; identical to cDNA
thioredoxin-like protein (hcf164 gene) GI;12049652
Length = 261
Score = 27.1 bits (57), Expect = 8.2
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +3
Query: 381 EFGTKLQDVMANGT---EALYNGKKDFYPTYVENGEACKE 491
+FG L+D+ A+ EAL NGK Y + E C+E
Sbjct: 116 DFGISLKDLTASALPYEEALSNGKPTVVEFYADWCEVCRE 155
>At2g24010.1 68415.m02868 serine carboxypeptidase S10 family protein
similar to Serine carboxypeptidase II chains A and B
(SP:P08819) (EC 3.4.16.6) [Triticum aestivum (Wheat)];
Length = 425
Score = 27.1 bits (57), Expect = 8.2
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 120 TSEAQLRYLLQWFGEFSELQREDFLPVLAAARRHEPDQLA 239
T++ L +L++W F + Q DF V + H QLA
Sbjct: 120 TAQENLIFLIKWMSRFPQYQYRDFYIVGESYAGHYVPQLA 159
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,260,756
Number of Sequences: 28952
Number of extensions: 221268
Number of successful extensions: 609
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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