Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_N14
(580 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g27900.1 68416.m03481 hypothetical protein 30 0.97
At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing ... 30 1.3
At4g05410.1 68417.m00823 transducin family protein / WD-40 repea... 29 2.2
At2g32235.1 68415.m03939 expressed protein 29 3.0
At3g47700.1 68416.m05196 chromosome structural maintenance prote... 28 3.9
At3g63260.2 68416.m07109 protein kinase, putative (MRK1) identic... 28 5.2
At3g63260.1 68416.m07108 protein kinase, putative (MRK1) identic... 28 5.2
At5g38690.1 68418.m04678 expressed protein 27 6.8
At5g21120.1 68418.m02518 ethylene-insensitive3-like2 (EIL2) iden... 27 6.8
At2g12875.1 68415.m01402 hypothetical protein 27 6.8
At3g51420.1 68416.m05632 strictosidine synthase family protein s... 27 9.0
>At3g27900.1 68416.m03481 hypothetical protein
Length = 244
Score = 30.3 bits (65), Expect = 0.97
Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Frame = +2
Query: 374 EVYFSAKDGIYVFDAKTNKTEKYGTNTDSLIGIVKTNGSDVLYV---LTENHDVYKVSDG 544
E Y K+G+Y+ D K+N+ E + + S + ++ VL + + + +V K SD
Sbjct: 103 ETYIKPKNGVYLADVKSNQWEVFVKSCKSFVFGIRELDRIVLILGKRESSSCEVVKTSDF 162
Query: 545 GNKNEKLEDVKD 580
+ N++L+ +++
Sbjct: 163 EHCNQELKKLEE 174
>At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 979
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 464 IGIVKTNGSDVLYVLTENHDVYKVSDGGNKNEKLEDVKD 580
+G + G+D++ +++NH K D NK + E VKD
Sbjct: 235 VGAAQLRGNDIVEKVSDNHASEKGHDKSNKVRREEHVKD 273
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 455 DSLIGIVKTNGSDVLYVLTENHDVYKVSDGGNKNEKLEDVKD 580
D L+G + G+D++ + E H K DG + E VKD
Sbjct: 171 DDLVGTAQLLGNDLVEKVPEYHVSEKEHDGSKNVRREERVKD 212
>At4g05410.1 68417.m00823 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); U3
snoRNP-associated 55-kDa protein, Homo sapiens,
gb:NP_004695; Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) [Podospora anserina]
Length = 504
Score = 29.1 bits (62), Expect = 2.2
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +2
Query: 353 ATNDDTTEVYFSAKDG-IYVFDAKTNKTEKYGTNTDSLIGIVKTNGSDVLYVLTENH 520
A +DD + + ++KDG I +D + KT+KY +D I+K++G + +NH
Sbjct: 168 ALSDDDSRGFSASKDGTIMHWDVSSGKTDKYIWPSDE---ILKSHGMKLREPRNKNH 221
>At2g32235.1 68415.m03939 expressed protein
Length = 310
Score = 28.7 bits (61), Expect = 3.0
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +2
Query: 299 SLKNGVATKILETGTDASATNDDTTEVYFSAKDGIYVFDAKTNKTEKYGTNTDSLIGIVK 478
SL + + G A+ + D ++ + KDG+ D NK KYG S G VK
Sbjct: 193 SLLGSSRSNAIPEGDLANPESSDANKMLYIIKDGVRELDQWCNKLLKYGEAVSS--GSVK 250
Query: 479 TNGS 490
+ S
Sbjct: 251 QDDS 254
>At3g47700.1 68416.m05196 chromosome structural maintenance
protein-related contains weak similarity to
RAD50-interacting protein 1 [Homo sapiens]
gi|11967435|gb|AAG42101
Length = 795
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 470 IVKTNGSDVLYVLTENHDVYKVSDGGNKNEKLEDV 574
+++ +D L LTEN+D+ KVS+ N +E V
Sbjct: 540 LLRCQDADGLTALTENNDLIKVSNSINAGHYIESV 574
>At3g63260.2 68416.m07109 protein kinase, putative (MRK1) identical
to ATMRK1 [Arabidopsis thaliana] gi|2351097|dbj|BAA22079
Length = 344
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +2
Query: 284 YKGLYSLKNGVATKILETGTDASATNDDTTEVYFSAKDGIYVF 412
Y+G+Y+ + VA K+L+ G D AT +TT + S + + V+
Sbjct: 98 YRGVYAGQE-VAVKVLDWGEDGYATPAETTALRASFEQEVAVW 139
>At3g63260.1 68416.m07108 protein kinase, putative (MRK1) identical
to ATMRK1 [Arabidopsis thaliana] gi|2351097|dbj|BAA22079
Length = 391
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +2
Query: 284 YKGLYSLKNGVATKILETGTDASATNDDTTEVYFSAKDGIYVF 412
Y+G+Y+ + VA K+L+ G D AT +TT + S + + V+
Sbjct: 98 YRGVYAGQE-VAVKVLDWGEDGYATPAETTALRASFEQEVAVW 139
>At5g38690.1 68418.m04678 expressed protein
Length = 572
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/62 (25%), Positives = 26/62 (41%)
Frame = +2
Query: 251 EADVNDKGEKEYKGLYSLKNGVATKILETGTDASATNDDTTEVYFSAKDGIYVFDAKTNK 430
E + K + E KNG+ I E S N +T EVY ++ I + K+
Sbjct: 431 EKQLKQKLQDELAQAVKAKNGIPLLITEHDAIVSRINAETQEVYSEMQNAIDMLSKKSQG 490
Query: 431 TE 436
++
Sbjct: 491 SD 492
>At5g21120.1 68418.m02518 ethylene-insensitive3-like2 (EIL2)
identical to ethylene-insensitive3-like2 (EIL2)
GI:2224929 from [Arabidopsis thaliana]
Length = 518
Score = 27.5 bits (58), Expect = 6.8
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = +2
Query: 305 KNGVATKILETGTDASATNDDTTEVYFSAKDGIYVFDAKTNKTEKYGTNTDSLIGIVKTN 484
KNG+ T++L + + A+DGI + +KT E+Y + GIV N
Sbjct: 69 KNGLGTRLLLKQQHDDFPEHSSKRTMYKAQDGILKYMSKT--MERYKAQ-GFVYGIVLEN 125
Query: 485 GSDV 496
G V
Sbjct: 126 GKTV 129
>At2g12875.1 68415.m01402 hypothetical protein
Length = 325
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 305 KNGVATKILETGTDASATNDDTTE 376
K GVATK+++ GT A+ +TE
Sbjct: 79 KRGVATKLIDKGTKATTEEPSSTE 102
>At3g51420.1 68416.m05632 strictosidine synthase family protein
similar to hemomucin [Drosophila
melanogaster][GI:1280434], strictosidine synthase
[Rauvolfia serpentina][SP|P15324]; contains
strictosidine synthase domain PF03088
Length = 370
Score = 27.1 bits (57), Expect = 9.0
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Frame = +2
Query: 353 ATNDDTTEVYFSAKDG----IYVFDAKTNKTEKYGTNTDSL-IGIVKTNGSDVLYVLTEN 517
A + D+ +Y DG + V D+ + + NT +GI +V+ V N
Sbjct: 74 AYHKDSNLIYTGCVDGWVKRVSVHDSANDSIVEDWVNTGGRPLGIAFGLHGEVI-VADAN 132
Query: 518 HDVYKVSDGGNKNEKLEDVKD 580
+ +SDGG K E L D D
Sbjct: 133 KGLLSISDGGKKTELLTDEAD 153
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,983,358
Number of Sequences: 28952
Number of extensions: 201424
Number of successful extensions: 572
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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