Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_N13
         (614 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          25   0.44 
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    24   1.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   4.1  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   9.6  

>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = -3

Query: 300 RRNQHTRHRRLSAVYLCVHSYNYS*HKRCQRTSVSLRSYWRRSVRTSRWYSREDTLSY 127
           + N+ T HR + AV +          K+   +S SLRS  R   RTS  +SR + L +
Sbjct: 182 KTNEITEHRTVLAVNIEKSENETKTCKKYAISSNSLRSRSRSFQRTSSCHSRYEDLRH 239


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 513 RFHIDYHLVNA*I*NTFTCQKVLYRALHMTKL 418
           + H++YHL N      F C+K  Y  ++ + L
Sbjct: 1   KHHLEYHLRNHFGSKPFKCEKCSYSCVNKSML 32


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +3

Query: 66  VAVSCRPDKPDLKQLKAEAARKKACLHDCTNVKFEPICA-SKNGEKPKSFGSVCVMNNYN 242
           V++S  P +P   ++     ++    +      FEP    S++ ++ K   S     NYN
Sbjct: 133 VSLSSPPREPGTPRINFTKLKRHHPRYKRPRTTFEPRATDSRHYDRYKEEES---NENYN 189

Query: 243 CEHKDT 260
            EHK+T
Sbjct: 190 WEHKET 195


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 82  RQLTATNKTAKIMRVSAFIFSTIQT 8
           R L++  KTA+++RVS       QT
Sbjct: 98  RSLSSFLKTAEVLRVSGLTQQADQT 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,824
Number of Sequences: 438
Number of extensions: 3903
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)