Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_N12
(637 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1455 + 27230134-27231110,27231195-27231327,27231417-272315... 31 0.58
04_02_0006 + 8455219-8457469,8457560-8457924 29 3.1
09_01_0066 - 978018-978500,978588-979034,979113-979412,979521-97... 28 5.4
06_03_1208 - 28422941-28423139,28423854-28424434,28424705-284250... 28 5.4
12_02_0412 - 18799217-18801061 28 7.1
05_04_0113 + 18085705-18085833,18086442-18086885 28 7.1
03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,487... 28 7.1
02_03_0247 - 16809742-16809780,16810070-16810298,16810381-168105... 28 7.1
12_02_0591 + 20864861-20867329 27 9.4
03_05_0520 + 25139314-25139364,25139580-25139711,25141594-251417... 27 9.4
>08_02_1455 +
27230134-27231110,27231195-27231327,27231417-27231501,
27233372-27233571
Length = 464
Score = 31.5 bits (68), Expect = 0.58
Identities = 25/71 (35%), Positives = 32/71 (45%)
Frame = -1
Query: 373 NPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPEVP 194
+PG V +P P LSSA A AA S+ L S P A P +P P++P
Sbjct: 17 SPGQPPVVPRSPTPLDLSSAAAAAAAASYRRLSPSLRPPA------HPQARLPSPYPQIP 70
Query: 193 SELSVRAPCAS 161
S S A +S
Sbjct: 71 SSSSAAAAGSS 81
>04_02_0006 + 8455219-8457469,8457560-8457924
Length = 871
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = -1
Query: 406 FTLPAAVTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSL 233
F P +V+L N G+C ++ + P SS PA + LL+K I + +F +L
Sbjct: 437 FQRPNSVSLEGNKGLCANIHILNLPICPSS--PAKTKNNKRLLLKVIPSITIALFSAL 492
>09_01_0066 -
978018-978500,978588-979034,979113-979412,979521-979855,
980325-980703
Length = 647
Score = 28.3 bits (60), Expect = 5.4
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = -1
Query: 361 CVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVPSE- 188
C S L P ++ SA + P+ C L+ P F L A+G P PE
Sbjct: 467 CASTELAENPTSVDSAVDHITEPTSCTLIVRVMP----TFTVLAAEGLAYKPTPETRVHG 522
Query: 187 LSVRAPCASLR 155
+RA CA ++
Sbjct: 523 AQLRADCAKVQ 533
>06_03_1208 -
28422941-28423139,28423854-28424434,28424705-28425078,
28425235-28425339,28425902-28425970,28426084-28426156,
28426395-28426478,28426616-28426648,28426731-28426790,
28427535-28427627,28427851-28427970,28428804-28428886,
28428887-28429007,28429114-28429164,28429245-28429333,
28429429-28429561,28430220-28430354,28430581-28430952,
28431679-28431796,28431883-28431998,28432131-28432442
Length = 1106
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 525 KDXIGASATAAHTDFINRNDYSLDGKLNLFQSPD 626
+D + + A T R D +DGKL++ +SPD
Sbjct: 224 EDFVDEAGNAYETACSERRDNDMDGKLHVAESPD 257
>12_02_0412 - 18799217-18801061
Length = 614
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 515 VYSATDSVEVGYXSDIWHISGGESLRCDVV 426
+YS+ +E G D+W+I GG L V+
Sbjct: 23 IYSSETDLEEGVFHDVWNICGGMPLAMIVI 52
>05_04_0113 + 18085705-18085833,18086442-18086885
Length = 190
Score = 27.9 bits (59), Expect = 7.1
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Frame = +3
Query: 123 EEPELLTSSRVRRDAHGALTLNSD-------GTSGAGVKVPFAGNDKNIVSAIGSLDL-- 275
E+ TS+R R G LT+ ++ G GAG ++P AG D + G +
Sbjct: 30 EDSPAATSTRKRLVGSGKLTIVAEIPRLALGGGGGAGERLPAAGEDSAAATNTGKCQVVG 89
Query: 276 TNRQKLGAATAGVALD 323
++ + AA+AG+ D
Sbjct: 90 SSLAAMVAASAGIQPD 105
>03_01_0005 +
46370-46454,46962-47071,47381-47545,47672-48463,
48730-48840,48935-49195,49415-49638,49735-49855,
50673-51214,51302-51488,51569-51895,52047-52197,
52287-52424,52918-53013,53276-53357,54411-54679,
54769-54882,55050-55288,55488-55715,55799-55951,
56479-56616,57061-57188,57598-57718,58142-58306,
59486-59633,59772-59898,60025-60118,60119-60268,
60577-60624,60712-60819,61040-61114,61225-61275,
61341-61487,61584-61714,61944-62031,62204-62266,
62336-62582,62830-62981,63056-63126,63214-63370,
63520-63687
Length = 2323
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Frame = +2
Query: 473 RXCTQLQHCRWRNRLYVQRXDW---CISDRRSHGLHQ 574
R C QLQ C + V R +W + HGLH+
Sbjct: 105 RSCVQLQECISKGSHQVMRAEWEKYLLGKAELHGLHR 141
>02_03_0247 -
16809742-16809780,16810070-16810298,16810381-16810551,
16810630-16811516,16811604-16812050,16812129-16812836
Length = 826
Score = 27.9 bits (59), Expect = 7.1
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Frame = -1
Query: 361 CVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVPSE- 188
C S L P ++ SA + P+ C L P F L A+G P PE
Sbjct: 365 CASTELAENPTSIDSAVDHITEPTSCTLTVRVMP----TFTVLAAEGLAYKPTPETTVHG 420
Query: 187 LSVRAPCASLR 155
+RA CA ++
Sbjct: 421 AQLRADCAKVQ 431
>12_02_0591 + 20864861-20867329
Length = 822
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 398 AGSCHLVSEPGDVCIRETY 342
AG CHL EPG V +R +
Sbjct: 299 AGECHLAGEPGLVAVRRFF 317
>03_05_0520 +
25139314-25139364,25139580-25139711,25141594-25141731,
25143191-25143241,25143662-25143751,25143854-25144000,
25144108-25144218,25144307-25144375,25144777-25145517,
25145840-25146004,25146376-25146442,25146580-25146704,
25148714-25148983,25149065-25149199,25149316-25149497,
25149669-25149744
Length = 849
Score = 27.5 bits (58), Expect = 9.4
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = -1
Query: 334 PFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPE-VPSELSVRAPCASL 158
P T+S++T AV+ + + + + T LPA T APE +P+ S AP S
Sbjct: 310 PTTISTSTAAVSVSAETISSPVRPIVPTTTAAVLPASVTARSAPENIPAVTS--APANSS 367
Query: 157 RTLE 146
TL+
Sbjct: 368 STLK 371
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,514,999
Number of Sequences: 37544
Number of extensions: 379221
Number of successful extensions: 1218
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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