Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_N12
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.4  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   1.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   1.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.3  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   5.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   5.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +1

Query: 448  SPPEICQISLMYPTSTLSVAE*TICSKXRLVHQRPPLTRTSSIVTITPWTES 603
            S P  CQ     P + +++    + S+  LV  RPP      I   T +T++
Sbjct: 1168 SAPIHCQTEQDAPEAPIAIKALVMSSESILVSWRPPSQPNGVITQYTVYTKA 1219


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 451 AKAFAVMSWXSLWKRFTLPAAVTL 380
           AK  +V  W S W     P+A T+
Sbjct: 328 AKTISVQQWNSYWGILGFPSAPTI 351


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 451 AKAFAVMSWXSLWKRFTLPAAVTL 380
           AK  +V  W S W     P+A T+
Sbjct: 328 AKTISVQQWNSYWGILGFPSAPTI 351


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 54  ALCVGVQSRYLIVSEPVYYIQHYEEP 131
           A+CVGV +  +I   PV Y+  YE P
Sbjct: 501 AICVGVFTFNIIKFVPVKYLT-YEYP 525


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 54  ALCVGVQSRYLIVSEPVYYIQHYEEP 131
           A+CVGV +  +I   PV Y+  YE P
Sbjct: 554 AICVGVFTFNIIKFVPVKYLT-YEYP 578


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 48  LVALCVGVQSRYLIVSEPVYY 110
           +++LC     RYL V++P+ Y
Sbjct: 126 ILSLCAISIDRYLAVTQPLIY 146


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 48  LVALCVGVQSRYLIVSEPVYYIQH 119
           LVA+ +    RY+ V++P+ Y +H
Sbjct: 277 LVAISI---DRYIAVTQPIKYAKH 297


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 48  LVALCVGVQSRYLIVSEPVYYIQ 116
           ++ LC     RYL V+ PV Y Q
Sbjct: 153 ILNLCAISLDRYLAVTRPVSYPQ 175


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,470
Number of Sequences: 438
Number of extensions: 3834
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)