Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_N11
(631 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0107 - 801148-803633,803727-803860,803990-804006,804321-80... 29 4.0
05_05_0055 + 21977546-21978061,21978144-21978162,21978168-219784... 29 4.0
02_02_0375 + 9543411-9543872,9547222-9547290,9547382-9547384,954... 29 4.0
07_03_1486 + 26899479-26899549,26899861-26899989,26900649-269008... 28 5.3
05_05_0185 + 23064249-23064448,23064881-23064950,23065082-230651... 28 7.0
12_01_0107 - 843820-846335,846400-846511 27 9.3
02_05_1034 - 33649634-33649651,33649699-33649811,33649938-336500... 27 9.3
01_06_1745 - 39609894-39610030,39610127-39610223,39613856-396139... 27 9.3
>11_01_0107 -
801148-803633,803727-803860,803990-804006,804321-804504,
804819-804883
Length = 961
Score = 28.7 bits (61), Expect = 4.0
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +1
Query: 262 VEADVNDKGEKEYKGLYSLKNGVATKILETGTDASATNDDTTEVYFSAKDGIYVFDAKTN 441
VE D N+KG G S+ N VAT D + ++++ TEV +A+ + DA +
Sbjct: 254 VETDGNEKGSFTDDG--SISNEVATTQSMVHMDGAGSDNNFTEVQSAAEGKCALSDANLD 311
Query: 442 KTE 450
E
Sbjct: 312 SQE 314
>05_05_0055 +
21977546-21978061,21978144-21978162,21978168-21978486,
21978779-21978799,21980780-21980857,21981116-21981359
Length = 398
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = -1
Query: 604 FLARLSHPLIFHFCYHRQTLCKHRDFLSKRI---EHRNRLF*LYRS 476
F L HPL+ H +HR+ K+R + + I H N L +RS
Sbjct: 323 FSIHLQHPLMAHDSFHRKGQAKYRAWTDEHIAPTNHTNSLTLSHRS 368
>02_02_0375 +
9543411-9543872,9547222-9547290,9547382-9547384,
9548336-9548422,9549027-9549094,9549192-9549333
Length = 276
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +1
Query: 55 IGLIKAAPVTEN-NDEKLIVSSELFINEFVQYSSKYDIVSLTVPLNSL 195
I + K+ PV + + KL+V+ E+ EF+ YD+ + VP NS+
Sbjct: 167 IVIFKSPPVLQEVHKGKLVVNGEVRNEEFILEPPSYDMNPVQVPENSV 214
>07_03_1486 + 26899479-26899549,26899861-26899989,26900649-26900834,
26901025-26901247,26901662-26901666,26901796-26901924,
26902697-26902894,26903138-26903356,26903461-26903699,
26903797-26903888,26904009-26904224,26904327-26904554,
26904631-26904722,26904806-26904899,26905475-26905567,
26905667-26906640,26906727-26906841,26907135-26908895
Length = 1687
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 67 KAAPVTENNDEKLIVSSELFINEFVQYSSKYDIVSLTVPLNSL 195
+AAP+ E+ VSS L ++E ++ S D VS P L
Sbjct: 1575 EAAPILEDRGMAPSVSSRLSLDEIIEISCDLDAVSALPPAKPL 1617
>05_05_0185 +
23064249-23064448,23064881-23064950,23065082-23065120,
23065639-23066067,23067322-23067627
Length = 347
Score = 27.9 bits (59), Expect = 7.0
Identities = 17/78 (21%), Positives = 30/78 (38%)
Frame = +1
Query: 397 FSAKDGIYVFDAKTNKTEKYGTNTDSLIGIVKTNGSDVLYVLTENHDVYKVSDGGNKNEK 576
FS + A + G++T S+ + T D + + +NHD VS +KN
Sbjct: 34 FSVATDAHEVSAGERRERGGGSSTSSVSPPMHTRNHDTSHDIEQNHDTSHVSHDPSKNHD 93
Query: 577 LEDVKDAQEIVLDYSNNL 630
V ++ N +
Sbjct: 94 TSHVSYDPPKIISLQNTI 111
>12_01_0107 - 843820-846335,846400-846511
Length = 875
Score = 27.5 bits (58), Expect = 9.3
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = +1
Query: 262 VEADVNDKGEKEYKGLYSLKNGVATKILETGTDASATNDDTTEVYFSAKDGIYVFDAKTN 441
VE D N+KG G S+ N VAT D + +++ TEV +A+ + DA +
Sbjct: 168 VETDGNEKGSFTDDG--SISNEVATTQSMVHMDGAGFDNNFTEVQSAAEGKCTLSDANLD 225
Query: 442 KTE 450
E
Sbjct: 226 SQE 228
>02_05_1034 -
33649634-33649651,33649699-33649811,33649938-33650029,
33650212-33650321,33650444-33650517,33650877-33650950,
33651091-33651158
Length = 182
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 373 NDDTTEVYFSAKDGIYVFDAKTNK 444
N D + Y KDG +FDA T K
Sbjct: 19 NQDNSLFYVGTKDGFRIFDAHTGK 42
>01_06_1745 -
39609894-39610030,39610127-39610223,39613856-39613996,
39614094-39614272,39615067-39615111,39615802-39615858,
39615935-39616163,39616348-39616418,39619527-39619635
Length = 354
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -3
Query: 59 PIKNTTPKKSVSCILVSC 6
PIKN TPK+S S + SC
Sbjct: 335 PIKNDTPKRSASYVCNSC 352
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.134 0.365
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,107,342
Number of Sequences: 37544
Number of extensions: 249111
Number of successful extensions: 452
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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