Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_N11
(631 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing ... 32 0.27
At3g27900.1 68416.m03481 hypothetical protein 31 0.48
At4g05410.1 68417.m00823 transducin family protein / WD-40 repea... 29 2.5
At3g60320.1 68416.m06742 expressed protein contains Pfam profile... 29 3.4
At2g32235.1 68415.m03939 expressed protein 29 3.4
At3g47700.1 68416.m05196 chromosome structural maintenance prote... 28 4.4
At4g02300.1 68417.m00311 pectinesterase family protein contains ... 28 5.9
At3g63260.2 68416.m07109 protein kinase, putative (MRK1) identic... 28 5.9
At3g63260.1 68416.m07108 protein kinase, putative (MRK1) identic... 28 5.9
At5g38690.1 68418.m04678 expressed protein 27 7.8
At5g21120.1 68418.m02518 ethylene-insensitive3-like2 (EIL2) iden... 27 7.8
At2g12875.1 68415.m01402 hypothetical protein 27 7.8
>At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 979
Score = 32.3 bits (70), Expect = 0.27
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 478 IGIVKTNGSDVLYVLTENHDVYKVSDGGNKNEKLEDVKDAQEIVLDY 618
+G + G+D++ +++NH K D NK + E VKD+ DY
Sbjct: 235 VGAAQLRGNDIVEKVSDNHASEKGHDKSNKVRREEHVKDSSRKKEDY 281
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 469 DSLIGIVKTNGSDVLYVLTENHDVYKVSDGGNKNEKLEDVKDA 597
D L+G + G+D++ + E H K DG + E VKD+
Sbjct: 171 DDLVGTAQLLGNDLVEKVPEYHVSEKEHDGSKNVRREERVKDS 213
>At3g27900.1 68416.m03481 hypothetical protein
Length = 244
Score = 31.5 bits (68), Expect = 0.48
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Frame = +1
Query: 388 EVYFSAKDGIYVFDAKTNKTEKYGTNTDSLIGIVKTNGSDVLYV---LTENHDVYKVSDG 558
E Y K+G+Y+ D K+N+ E + + S + ++ VL + + + +V K SD
Sbjct: 103 ETYIKPKNGVYLADVKSNQWEVFVKSCKSFVFGIRELDRIVLILGKRESSSCEVVKTSDF 162
Query: 559 GNKNEKLEDVKDAQEIVLDYS 621
+ N++L+ +++ D S
Sbjct: 163 EHCNQELKKLEETLRSAKDVS 183
>At4g05410.1 68417.m00823 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); U3
snoRNP-associated 55-kDa protein, Homo sapiens,
gb:NP_004695; Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) [Podospora anserina]
Length = 504
Score = 29.1 bits (62), Expect = 2.5
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +1
Query: 367 ATNDDTTEVYFSAKDG-IYVFDAKTNKTEKYGTNTDSLIGIVKTNGSDVLYVLTENH 534
A +DD + + ++KDG I +D + KT+KY +D I+K++G + +NH
Sbjct: 168 ALSDDDSRGFSASKDGTIMHWDVSSGKTDKYIWPSDE---ILKSHGMKLREPRNKNH 221
>At3g60320.1 68416.m06742 expressed protein contains Pfam profiles:
PF04782: protein of unknown function (DUF632), PF04783:
protein of unknown function (DUF630)
Length = 796
Score = 28.7 bits (61), Expect = 3.4
Identities = 19/78 (24%), Positives = 35/78 (44%)
Frame = +1
Query: 373 NDDTTEVYFSAKDGIYVFDAKTNKTEKYGTNTDSLIGIVKTNGSDVLYVLTENHDVYKVS 552
ND+ TE S D FD + K +++ + + + +T +V E+HD Y +
Sbjct: 212 NDEDTETVRSEYD---FFDTRKQKQKQFESMRNQVEEETETEREEVQCSEWEDHDHYSTT 268
Query: 553 DGGNKNEKLEDVKDAQEI 606
+ E+ E+ D + I
Sbjct: 269 SSSDAAEEEEEDDDRESI 286
>At2g32235.1 68415.m03939 expressed protein
Length = 310
Score = 28.7 bits (61), Expect = 3.4
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +1
Query: 313 SLKNGVATKILETGTDASATNDDTTEVYFSAKDGIYVFDAKTNKTEKYGTNTDSLIGIVK 492
SL + + G A+ + D ++ + KDG+ D NK KYG S G VK
Sbjct: 193 SLLGSSRSNAIPEGDLANPESSDANKMLYIIKDGVRELDQWCNKLLKYGEAVSS--GSVK 250
Query: 493 TNGS 504
+ S
Sbjct: 251 QDDS 254
>At3g47700.1 68416.m05196 chromosome structural maintenance
protein-related contains weak similarity to
RAD50-interacting protein 1 [Homo sapiens]
gi|11967435|gb|AAG42101
Length = 795
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 484 IVKTNGSDVLYVLTENHDVYKVSDGGNKNEKLEDV 588
+++ +D L LTEN+D+ KVS+ N +E V
Sbjct: 540 LLRCQDADGLTALTENNDLIKVSNSINAGHYIESV 574
>At4g02300.1 68417.m00311 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 532
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +1
Query: 535 DVYKVSDGGNKNEKLEDV-KDAQEIVLDYSNNL 630
D + SD N N+ ++ ++ +EI+LD SNNL
Sbjct: 141 DGFSTSDNENNNDMTYELPENLKEIILDISNNL 173
>At3g63260.2 68416.m07109 protein kinase, putative (MRK1) identical
to ATMRK1 [Arabidopsis thaliana] gi|2351097|dbj|BAA22079
Length = 344
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +1
Query: 298 YKGLYSLKNGVATKILETGTDASATNDDTTEVYFSAKDGIYVF 426
Y+G+Y+ + VA K+L+ G D AT +TT + S + + V+
Sbjct: 98 YRGVYAGQE-VAVKVLDWGEDGYATPAETTALRASFEQEVAVW 139
>At3g63260.1 68416.m07108 protein kinase, putative (MRK1) identical
to ATMRK1 [Arabidopsis thaliana] gi|2351097|dbj|BAA22079
Length = 391
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +1
Query: 298 YKGLYSLKNGVATKILETGTDASATNDDTTEVYFSAKDGIYVF 426
Y+G+Y+ + VA K+L+ G D AT +TT + S + + V+
Sbjct: 98 YRGVYAGQE-VAVKVLDWGEDGYATPAETTALRASFEQEVAVW 139
>At5g38690.1 68418.m04678 expressed protein
Length = 572
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/62 (25%), Positives = 26/62 (41%)
Frame = +1
Query: 265 EADVNDKGEKEYKGLYSLKNGVATKILETGTDASATNDDTTEVYFSAKDGIYVFDAKTNK 444
E + K + E KNG+ I E S N +T EVY ++ I + K+
Sbjct: 431 EKQLKQKLQDELAQAVKAKNGIPLLITEHDAIVSRINAETQEVYSEMQNAIDMLSKKSQG 490
Query: 445 TE 450
++
Sbjct: 491 SD 492
>At5g21120.1 68418.m02518 ethylene-insensitive3-like2 (EIL2)
identical to ethylene-insensitive3-like2 (EIL2)
GI:2224929 from [Arabidopsis thaliana]
Length = 518
Score = 27.5 bits (58), Expect = 7.8
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = +1
Query: 319 KNGVATKILETGTDASATNDDTTEVYFSAKDGIYVFDAKTNKTEKYGTNTDSLIGIVKTN 498
KNG+ T++L + + A+DGI + +KT E+Y + GIV N
Sbjct: 69 KNGLGTRLLLKQQHDDFPEHSSKRTMYKAQDGILKYMSKT--MERYKAQ-GFVYGIVLEN 125
Query: 499 GSDV 510
G V
Sbjct: 126 GKTV 129
>At2g12875.1 68415.m01402 hypothetical protein
Length = 325
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 319 KNGVATKILETGTDASATNDDTTE 390
K GVATK+++ GT A+ +TE
Sbjct: 79 KRGVATKLIDKGTKATTEEPSSTE 102
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.134 0.365
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,958,055
Number of Sequences: 28952
Number of extensions: 223106
Number of successful extensions: 505
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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