Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_N10
(616 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g08450.2 68418.m00996 expressed protein KED, Nicotiana tabacu... 29 2.4
At5g08450.1 68418.m00995 expressed protein KED, Nicotiana tabacu... 29 2.4
At1g13980.1 68414.m01647 pattern formation protein (EMB30) (GNOM... 29 2.4
At3g27925.1 68416.m03484 DegP protease, putative SP:022609; almo... 29 3.2
At2g23300.1 68415.m02781 leucine-rich repeat transmembrane prote... 28 4.3
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 28 5.7
At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-conta... 28 5.7
At5g18550.1 68418.m02193 zinc finger (CCCH-type) family protein ... 27 7.5
At1g71320.1 68414.m08232 S locus F-box-related / SLF-related con... 27 7.5
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 27 7.5
At5g65160.1 68418.m08195 tetratricopeptide repeat (TPR)-containi... 27 9.9
>At5g08450.2 68418.m00996 expressed protein KED, Nicotiana tabacum,
EMBL:AB009883
Length = 918
Score = 29.1 bits (62), Expect = 2.4
Identities = 21/78 (26%), Positives = 27/78 (34%)
Frame = +2
Query: 335 PRSKSHGYTHPRVRRQGDSCRQSESLPQRLPRHHSEGFRHQKYARYRXCTQLQHCRWRNR 514
P H + P Q S Q + Q LP HS H A + R
Sbjct: 45 PAQVHHNHQQPHQHPQSQSQSQPQPHLQALPHPHSHSHSHSPLAAAASASAPYEVESRTV 104
Query: 515 LYVQRSDWCISDRRSHGP 568
+ V RS+ +RRS P
Sbjct: 105 VKVARSEPRDGERRSPLP 122
>At5g08450.1 68418.m00995 expressed protein KED, Nicotiana tabacum,
EMBL:AB009883
Length = 918
Score = 29.1 bits (62), Expect = 2.4
Identities = 21/78 (26%), Positives = 27/78 (34%)
Frame = +2
Query: 335 PRSKSHGYTHPRVRRQGDSCRQSESLPQRLPRHHSEGFRHQKYARYRXCTQLQHCRWRNR 514
P H + P Q S Q + Q LP HS H A + R
Sbjct: 45 PAQVHHNHQQPHQHPQSQSQSQPQPHLQALPHPHSHSHSHSPLAAAASASAPYEVESRTV 104
Query: 515 LYVQRSDWCISDRRSHGP 568
+ V RS+ +RRS P
Sbjct: 105 VKVARSEPRDGERRSPLP 122
>At1g13980.1 68414.m01647 pattern formation protein (EMB30) (GNOM)
identical to SP|Q42510; contains Pfam profile PF01369:
Sec7 domain
Length = 1451
Score = 29.1 bits (62), Expect = 2.4
Identities = 22/63 (34%), Positives = 32/63 (50%)
Frame = +3
Query: 66 GVQSRYLIVSEPVYYIQHYEEPELLTSSRVRRDAHGALTLNSDGTSGAGVKVPFAGNDKN 245
GV S Y IVS+PV E ++ S + A GA +L DG G G + P + D +
Sbjct: 249 GVDSDYAIVSKPVEDGNANSEYDVENS--MATFATGAQSLMDDGPVGPGSRKPASPYDLH 306
Query: 246 IVS 254
I++
Sbjct: 307 IMT 309
>At3g27925.1 68416.m03484 DegP protease, putative SP:022609; almost
identical to DegP protease precursor GB:AF028842 from
[Arabidopsis thaliana] (J. Biol. Chem. 273 (12),
7094-7098 (1998))
Length = 439
Score = 28.7 bits (61), Expect = 3.2
Identities = 23/80 (28%), Positives = 40/80 (50%)
Frame = -1
Query: 364 MCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPEVPSEL 185
+C SV L+ F+L +A+PAV + S +V + + + ++ TP+ + L
Sbjct: 83 LCTSVALS---FSLFAASPAVESAS-AFVVSTPKKLQTDELATVRLFQENTPSVVYITNL 138
Query: 184 SVRAPCASLRTLELVNSSGS 125
+VR +L LE+ SGS
Sbjct: 139 AVRQDAFTLDVLEVPQGSGS 158
>At2g23300.1 68415.m02781 leucine-rich repeat transmembrane protein
kinase, putative
Length = 773
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -1
Query: 391 AVTLSPNPGMCVSVRLTPWPFTLSSAT--PAVAAPSFCLLVKS 269
+++ S NPG+C P P S AT P + P+ + KS
Sbjct: 268 SISFSGNPGLCGGPTRNPCPIPSSPATVSPPTSTPALAAIPKS 310
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 329 KRPRSKSHGYTHPRVRRQGDSCRQSESLPQRLPRHHSEGF 448
+ PR +SHG ++ +GD +SE + RH+ + F
Sbjct: 253 RSPRGRSHGRSYREDSYEGDHWNESERRREYEDRHNQDHF 292
>At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-containing
protein contains Pfam profile PF00226: DnaJ domain
Length = 2554
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -1
Query: 400 LPAAVTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSK 266
L A+ LS G+C LTP+ T + A+ P L+K +
Sbjct: 1804 LQASQALSRLTGLCADESLTPYNATAADVLKALLTPKLASLLKDE 1848
>At5g18550.1 68418.m02193 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 456
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = -1
Query: 394 AAVTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSK--EPIALT 248
++++ SP+P + + P+P +L + P+ ++ L+ S EPI T
Sbjct: 366 SSLSYSPSPSSLTDMPVAPYPSSLGTLAPSSSSDQCTELISSSSIEPITTT 416
>At1g71320.1 68414.m08232 S locus F-box-related / SLF-related
contains F-box domain Pfam:PF00646; contains TIGRFAM
TIGR01640: F-box protein interaction domain; similar to
S locus F-box (SLF)-S2-like protein (GI:13161528)
[Antirrhinum hispanicum]
Length = 392
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -1
Query: 364 MCVSVRLTPWPFTLSSATPAVA 299
M +S WPFTLS TPA+A
Sbjct: 144 MKLSPEFMQWPFTLSYLTPAMA 165
>At1g59910.1 68414.m06749 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 929
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 403 TLPAAVTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPS 290
+LP + N + S LTP FT ++A PA P+
Sbjct: 342 SLPPGQYMPGNAALSASTPLTPGQFTTANAPPAPPGPA 379
>At5g65160.1 68418.m08195 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 593
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 270 DLTNRQKLGAATAGVALDNVNGHGVSLT 353
+L N + G TAGV N NG+GV T
Sbjct: 180 NLGNLNQTGPVTAGVNYGNNNGYGVKRT 207
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,489,024
Number of Sequences: 28952
Number of extensions: 286383
Number of successful extensions: 853
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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