Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_N09
(485 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27757| Best HMM Match : No HMM Matches (HMM E-Value=.) 84 5e-17
SB_5056| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.67
SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 2.7
SB_14715| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0024) 28 4.7
SB_49814| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.2
SB_32579| Best HMM Match : 7tm_1 (HMM E-Value=4e-15) 27 6.2
SB_52289| Best HMM Match : SH3_1 (HMM E-Value=3.5e-13) 27 6.2
SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 27 6.2
SB_26456| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.00011) 27 6.2
SB_5425| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
>SB_27757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 344
Score = 84.2 bits (199), Expect = 5e-17
Identities = 41/94 (43%), Positives = 60/94 (63%)
Frame = +2
Query: 131 PGSGVSRQQIRLNQLHLTKFRLKYPFTAPTRVVRKAWTDAQLNEKWAKSQWAQKLANKEK 310
P GV RQ I + L LT F++K +A + V+KA+ AQ+ +KW ++ WA+KLA ++K
Sbjct: 249 PHGGVCRQAINMKHLSLTDFKIKIGRSARSGPVKKAFEAAQVQDKWEQTAWARKLAMRKK 308
Query: 311 RAQMTDYDRFKLTSARVKRNRARTAVFKSLKVKA 412
RA + D+DRFKL A+ K+NR K LK +A
Sbjct: 309 RATLNDFDRFKLKLAKQKKNRLLRTEVKKLKKEA 342
>SB_5056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 726
Score = 30.7 bits (66), Expect = 0.67
Identities = 26/117 (22%), Positives = 48/117 (41%), Gaps = 3/117 (2%)
Frame = +2
Query: 125 DGPGSGVSRQQIRLNQLHLTKFRLKYPFTAPTRVVRKAWTDAQLNEKWAKSQWAQKLANK 304
D G G R + LN +H+ + Y +V + TDA+ + WA+ +W K+
Sbjct: 456 DVSGGGGDRNCVVLNDIHIDI--MDY-------IVPASCTDAEFRQMWAEFEWENKVTVN 506
Query: 305 EKRAQMTDYDRFKLTSARVKRNRARTAVFKSLKVKAAR---AGVFGKSKIPKSAVEK 466
+ + +Y + S + A+ S AA +FG+ + ++EK
Sbjct: 507 TNISDLREYLGHLIASTNMLCLTPEKALAGSCGFLAANLYAKSIFGEDALANVSIEK 563
>SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4002
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Frame = +1
Query: 106 SNTRTY*RSRQW--CFAATNSPQPTPFNKIPPKIPFYS-THTCCQKSVDRRS 252
S T Y + R+W C P+P P K P P Y T C K RR+
Sbjct: 946 SLTNNYDKDRKWGYCRGYPPKPKPPPRPKPRPNTPIYHYTIVGCYKDKSRRA 997
>SB_14715| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0024)
Length = 2040
Score = 27.9 bits (59), Expect = 4.7
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = +2
Query: 248 AQLNEKWAKSQWAQKLAN---KEKRAQMTDYDRFKLTSARVKRNRARTAVFKS-LKVKAA 415
AQL W + W+ +L N ++ R Q D + +V R+R + V +S + +A
Sbjct: 1388 AQLRGDWGRVWWSDRLVNHLARDGRGQKVDQEYRSRIEGQVLRSRIQDLVPRSRIPGRAP 1447
Query: 416 RAGVFGK 436
R+ + G+
Sbjct: 1448 RSRIQGQ 1454
>SB_49814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 302
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 89 VVDIIDQTRALIDGPGSGVSRQQIRLNQLHLTKFRLKYPFTAPTRVVRK 235
++D IDQ + ID S + +R+ Q + K R FTA T +++K
Sbjct: 95 IIDQIDQVQNQIDSLNEEASEEILRVEQKYNAKRRPH--FTARTNLIKK 141
>SB_32579| Best HMM Match : 7tm_1 (HMM E-Value=4e-15)
Length = 357
Score = 27.5 bits (58), Expect = 6.2
Identities = 24/89 (26%), Positives = 38/89 (42%)
Frame = +2
Query: 8 VMPFARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGVSRQQIRLNQLHLTK 187
++P+ YV V ++ LK + V D + + G +GV I L + +
Sbjct: 216 ILPYLAYVVYLTVMMI----LKPPVSYVTDFTVRYATAVAGYSNGVLNPVIYLIFMKDAR 271
Query: 188 FRLKYPFTAPTRVVRKAWTDAQLNEKWAK 274
RLK FT RV R +L + W+K
Sbjct: 272 ARLKGLFTRRQRVGRHHVAKERLQQTWSK 300
>SB_52289| Best HMM Match : SH3_1 (HMM E-Value=3.5e-13)
Length = 803
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -3
Query: 207 KGYFRRNFVKWSWLRRICCRETPL 136
KG F + FV W+ CCR PL
Sbjct: 407 KGMFPKEFVDWNTFVIACCRFLPL 430
>SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1572
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 194 LKYPFTAPTRVVRKAWTDAQLNEKWAKS 277
L++ FT PT+V R A Q + +W KS
Sbjct: 1112 LEFQFTHPTKVTRVATQGRQDSAQWVKS 1139
>SB_26456| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.00011)
Length = 343
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -3
Query: 267 HFSFS*ASVHAFLTTRVGAVKGYFRRNFVKWSW 169
HF ++ V T + AVK YFR + K W
Sbjct: 298 HFDYTDLIVSKISRTSIDAVKDYFREDLQKSDW 330
>SB_5425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 436
Score = 27.1 bits (57), Expect = 8.2
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Frame = +2
Query: 146 SRQQIRLNQLHLTKFRLKYPFT-APTRVVRKAWTDAQLNEKWAKSQWAQKLANKEKRAQM 322
S+ QI+ + + + KY A ++ + A K AK KLAN K
Sbjct: 214 SQMQIQTRKCKIQTRKCKYKLANAKYKLANAKYKLANAKYKLAK----YKLANANKSKIQ 269
Query: 323 TDYDRFKLTSARVKRNRARTAVFKSLKVKAARA 421
T ++KL +A+ K A+ + K+ K K A A
Sbjct: 270 TRKCKYKLANAKYKLENAKYKLAKA-KYKLANA 301
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,543,018
Number of Sequences: 59808
Number of extensions: 273009
Number of successful extensions: 739
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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