Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_N09
(485 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g20450.1 68415.m02387 60S ribosomal protein L14 (RPL14A) 99 1e-21
At4g27090.1 68417.m03894 60S ribosomal protein L14 (RPL14B) ribo... 97 6e-21
At1g64530.1 68414.m07315 RWP-RK domain-containing protein simila... 32 0.24
At1g32040.1 68414.m03941 hypothetical protein 29 1.7
At4g33985.1 68417.m04822 expressed protein 29 2.2
At1g21990.1 68414.m02751 F-box family protein contains F-box dom... 29 2.2
At2g41710.2 68415.m05155 ovule development protein, putative sim... 28 3.8
At2g41710.1 68415.m05154 ovule development protein, putative sim... 28 3.8
At5g23080.1 68418.m02698 SWAP (Suppressor-of-White-APricot)/surp... 27 5.1
At1g24060.1 68414.m03037 expressed protein 27 6.7
At4g17740.2 68417.m02649 C-terminal processing protease, putativ... 27 8.9
At4g17740.1 68417.m02648 C-terminal processing protease, putativ... 27 8.9
>At2g20450.1 68415.m02387 60S ribosomal protein L14 (RPL14A)
Length = 134
Score = 99.1 bits (236), Expect = 1e-21
Identities = 51/119 (42%), Positives = 74/119 (62%)
Frame = +2
Query: 11 MPFARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGVSRQQIRLNQLHLTKF 190
M F R+VE GRVALV+ G GKLV +VD++DQ RAL+D P + R Q+ L +L LT
Sbjct: 1 MGFKRFVEIGRVALVNYGEDYGKLVVIVDVVDQNRALVDAPD--MERIQMNLKRLSLTDI 58
Query: 191 RLKYPFTAPTRVVRKAWTDAQLNEKWAKSQWAQKLANKEKRAQMTDYDRFKLTSARVKR 367
+ +V+ +A A + KW KS W +KL +++RA + D+DRFK+ A++KR
Sbjct: 59 VIDINRVPKKKVLIEAMEKADVKNKWEKSSWGRKLIVQKRRAALNDFDRFKIMLAKIKR 117
>At4g27090.1 68417.m03894 60S ribosomal protein L14 (RPL14B)
ribosomal protein L14 - Human,PIR3:JC5954
Length = 134
Score = 97.1 bits (231), Expect = 6e-21
Identities = 49/119 (41%), Positives = 72/119 (60%)
Frame = +2
Query: 11 MPFARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGVSRQQIRLNQLHLTKF 190
M F RYVE GRVALV+ G GKLV +VD++DQ RAL+D P + R Q+ +L LT
Sbjct: 1 MGFKRYVEIGRVALVNYGEDHGKLVVIVDVVDQNRALVDAP--DMERIQMNFKRLSLTDI 58
Query: 191 RLKYPFTAPTRVVRKAWTDAQLNEKWAKSQWAQKLANKEKRAQMTDYDRFKLTSARVKR 367
+ + + +A A + KW KS W +KL +++RA + D+DRFK+ A++K+
Sbjct: 59 VIDINRVPKKKALIEAMEKADVKNKWEKSSWGRKLIVQKRRANLNDFDRFKIMLAKIKK 117
>At1g64530.1 68414.m07315 RWP-RK domain-containing protein similar to
nodule inception protein [Lotus japonicus] GI:6448579;
contains Pfam profile: PF02042 RWP-RK domain
Length = 841
Score = 31.9 bits (69), Expect = 0.24
Identities = 38/149 (25%), Positives = 59/149 (39%), Gaps = 15/149 (10%)
Frame = +2
Query: 14 PFARYVEPGRVALVSDGP--LKGKLVGVVDIIDQTRALIDGPGSGVSRQQIRLNQLHLTK 187
P+ + P + L + P L + D+ + R D GS SR ++N + T+
Sbjct: 634 PWPHQIPPIDIQLAKNCPPTSTSPLSNLQDVKIENRDAEDSAGSSTSRASCKVNPICETR 693
Query: 188 FRLKYPFTAPTRVVRKAWTDAQLNEKWAKSQWA----QKLANKE---------KRAQMTD 328
FRL P+R V A D+ + K + WA Q A+ K D
Sbjct: 694 FRLPTHNQEPSRQV--ALDDSDSSSKNMTNFWAHLTCQDTASPTILQHKLVSIKATYRED 751
Query: 329 YDRFKLTSARVKRNRARTAVFKSLKVKAA 415
RFK++ V + V K LK++ A
Sbjct: 752 IIRFKISPESVSITELKQQVAKRLKLETA 780
>At1g32040.1 68414.m03941 hypothetical protein
Length = 408
Score = 29.1 bits (62), Expect = 1.7
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +2
Query: 245 DAQLNEKWAKSQWAQKLANKEKRAQMTDYDRFKLTSARV 361
+A L ++ AK +W + + N + T D+F+ T A++
Sbjct: 264 EATLAKEKAKEEWLEAIRNSRRETSATFADKFQATEAKM 302
>At4g33985.1 68417.m04822 expressed protein
Length = 154
Score = 28.7 bits (61), Expect = 2.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +2
Query: 203 PFTAPTR--VVRKAWT-DAQLNEKWAKSQWAQKLANKEKRAQMTDYD 334
PF AP R V + +W+ DA E W + + Q L + +TD D
Sbjct: 7 PFQAPPRPLVKQHSWSPDADREEAWLRKKGKQSLGRLGRSKSVTDED 53
>At1g21990.1 68414.m02751 F-box family protein contains F-box domain
Pfam:PF00646
Length = 465
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +2
Query: 41 RVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGVSRQQIRLNQLH 178
++ L D P +G D +++T AL+D P S + + + + LH
Sbjct: 50 KLELTEDHPSGRCSLGFPDFVEKTLALLDRPCSVIKKVHLNCDHLH 95
>At2g41710.2 68415.m05155 ovule development protein, putative
similar to ovule development protein AINTEGUMENTA
(GI:1209099) [Arabidopsis thaliana];Pfam domain
(PF00847)
Length = 428
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = +2
Query: 224 VVRKAWTDAQLNEKWAKSQWAQKLANKEKRAQMTDYD 334
V R WT W KS W Q K K+ + YD
Sbjct: 74 VTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYD 110
>At2g41710.1 68415.m05154 ovule development protein, putative
similar to ovule development protein AINTEGUMENTA
(GI:1209099) [Arabidopsis thaliana];Pfam domain
(PF00847)
Length = 423
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = +2
Query: 224 VVRKAWTDAQLNEKWAKSQWAQKLANKEKRAQMTDYD 334
V R WT W KS W Q K K+ + YD
Sbjct: 74 VTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYD 110
>At5g23080.1 68418.m02698 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 930
Score = 27.5 bits (58), Expect = 5.1
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +2
Query: 308 KRAQMTDYDRFKLTSARVKRNRARTAVFKSLKVKAARAGVFGKSKIPK 451
KR + D KL A RN+ + VF VKAA A +S++PK
Sbjct: 649 KRFDLPDPFMGKLPPAPRARNKMDSLVFLPDTVKAASARQVSESQVPK 696
>At1g24060.1 68414.m03037 expressed protein
Length = 122
Score = 27.1 bits (57), Expect = 6.7
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 299 NKEKRAQMTDYDRFKLTSARVKRNRA 376
NK KRA+ D K+TS KR RA
Sbjct: 37 NKRKRAKCDDPSMIKITSENNKRTRA 62
>At4g17740.2 68417.m02649 C-terminal processing protease, putative
similar to C-terminal protease precursor [Spinacia
oleracea] GI:999435; similar to SP|Q44879| (Bartonella
bacilliformis)
Length = 505
Score = 26.6 bits (56), Expect = 8.9
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 14 PFARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGV 145
PF R++EPG+ + G +G + GV I A DGP +G+
Sbjct: 178 PFTRFLEPGKFKSLRSG-TQGAVTGVGLSIGYPTA-SDGPPAGL 219
>At4g17740.1 68417.m02648 C-terminal processing protease, putative
similar to C-terminal protease precursor [Spinacia
oleracea] GI:999435; similar to SP|Q44879| (Bartonella
bacilliformis)
Length = 515
Score = 26.6 bits (56), Expect = 8.9
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 14 PFARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGV 145
PF R++EPG+ + G +G + GV I A DGP +G+
Sbjct: 188 PFTRFLEPGKFKSLRSG-TQGAVTGVGLSIGYPTA-SDGPPAGL 229
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,925,963
Number of Sequences: 28952
Number of extensions: 186098
Number of successful extensions: 580
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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