Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_N08
(610 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati... 274 3e-74
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati... 274 3e-74
At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP... 274 4e-74
At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati... 274 4e-74
At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putati... 274 4e-74
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 53 1e-07
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 53 1e-07
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 53 1e-07
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial... 49 3e-06
At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit... 43 2e-04
At3g28770.1 68416.m03591 expressed protein 32 0.26
At1g26330.1 68414.m03211 hypothetical protein 30 1.0
At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1 nuc... 29 2.4
At2g31780.1 68415.m03880 zinc finger (C3HC4-type RING finger) fa... 29 2.4
At2g31770.1 68415.m03879 zinc finger (C3HC4-type RING finger) fa... 29 2.4
At2g31760.1 68415.m03878 zinc finger protein-related contains lo... 29 2.4
At2g30370.1 68415.m03696 allergen-related weak similarity to pol... 29 2.4
At5g21160.1 68418.m02528 La domain-containing protein / proline-... 28 4.2
At5g24970.1 68418.m02957 ABC1 family protein contains Pfam domai... 27 9.7
At5g07530.1 68418.m00862 glycine-rich protein (GRP17) olesin; gl... 27 9.7
At3g09760.1 68416.m01156 zinc finger (C3HC4-type RING finger) fa... 27 9.7
At1g56190.1 68414.m06458 phosphoglycerate kinase, putative simil... 27 9.7
>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 274 bits (672), Expect = 3e-74
Identities = 131/170 (77%), Positives = 145/170 (85%)
Frame = +3
Query: 72 LTYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQVFEGTSG 251
+ Y+TVSGV GPLVIL++VK PK+ EIV ++L DGT R GQVLEV G KAVVQVFEGTSG
Sbjct: 18 MEYRTVSGVAGPLVILEKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSG 77
Query: 252 IDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGQPINPWSRI 431
ID K T +FTG++L+TPVS DMLGR+FNGSGKPID GPPIL E +LDI G INP R
Sbjct: 78 IDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERT 137
Query: 432 YPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVK 581
YPEEMIQTGIS IDVMNSIARGQKIP+FSAAGLPHNEIAAQICRQAGLVK
Sbjct: 138 YPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVK 187
>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 274 bits (672), Expect = 3e-74
Identities = 131/170 (77%), Positives = 145/170 (85%)
Frame = +3
Query: 72 LTYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQVFEGTSG 251
+ Y+TVSGV GPLVIL++VK PK+ EIV ++L DGT R GQVLEV G KAVVQVFEGTSG
Sbjct: 18 MEYRTVSGVAGPLVILEKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSG 77
Query: 252 IDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGQPINPWSRI 431
ID K T +FTG++L+TPVS DMLGR+FNGSGKPID GPPIL E +LDI G INP R
Sbjct: 78 IDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERT 137
Query: 432 YPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVK 581
YPEEMIQTGIS IDVMNSIARGQKIP+FSAAGLPHNEIAAQICRQAGLVK
Sbjct: 138 YPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVK 187
>At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase
B subunit / vacuolar proton pump B subunit / V-ATPase 57
kDa subunit identical to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}
Length = 486
Score = 274 bits (671), Expect = 4e-74
Identities = 131/170 (77%), Positives = 145/170 (85%)
Frame = +3
Query: 72 LTYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQVFEGTSG 251
+ Y+TVSGV GPLVILD+VK PK+ EIV ++L DG+ R GQVLEV G KAVVQVFEGTSG
Sbjct: 17 MEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGSTRRGQVLEVDGEKAVVQVFEGTSG 76
Query: 252 IDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGQPINPWSRI 431
ID K T +FTG++L+TPVS DMLGR+FNGSGKPID GPPIL E +LDI G INP R
Sbjct: 77 IDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERT 136
Query: 432 YPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVK 581
YPEEMIQTGIS IDVMNSIARGQKIP+FSAAGLPHNEIAAQICRQAGLVK
Sbjct: 137 YPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVK 186
>At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 485
Score = 274 bits (671), Expect = 4e-74
Identities = 131/170 (77%), Positives = 145/170 (85%)
Frame = +3
Query: 72 LTYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQVFEGTSG 251
+ Y+TVSGV GPLVILD+VK PK+ EIV ++L DG+ R GQVLEV G KAVVQVFEGTSG
Sbjct: 17 MEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGSTRRGQVLEVDGEKAVVQVFEGTSG 76
Query: 252 IDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGQPINPWSRI 431
ID K T +FTG++L+TPVS DMLGR+FNGSGKPID GPPIL E +LDI G INP R
Sbjct: 77 IDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERT 136
Query: 432 YPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVK 581
YPEEMIQTGIS IDVMNSIARGQKIP+FSAAGLPHNEIAAQICRQAGLVK
Sbjct: 137 YPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVK 186
>At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 330
Score = 274 bits (671), Expect = 4e-74
Identities = 131/170 (77%), Positives = 145/170 (85%)
Frame = +3
Query: 72 LTYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQVFEGTSG 251
+ Y+TVSGV GPLVILD+VK PK+ EIV ++L DG+ R GQVLEV G KAVVQVFEGTSG
Sbjct: 17 MEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGSTRRGQVLEVDGEKAVVQVFEGTSG 76
Query: 252 IDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGQPINPWSRI 431
ID K T +FTG++L+TPVS DMLGR+FNGSGKPID GPPIL E +LDI G INP R
Sbjct: 77 IDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERT 136
Query: 432 YPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVK 581
YPEEMIQTGIS IDVMNSIARGQKIP+FSAAGLPHNEIAAQICRQAGLVK
Sbjct: 137 YPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVK 186
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 53.2 bits (122), Expect = 1e-07
Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Frame = +3
Query: 195 VLEVS---GSKAVVQV-FEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 362
VLEVS G V + +GT G+ + TG + PV LGR+ N G+PID+
Sbjct: 121 VLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLN-TGAPITVPVGRATLGRIMNVLGEPIDE 179
Query: 363 GPPILAEDFLDIQGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGL 530
I E +L I +E++ TGI +D++ RG KI +F AG+
Sbjct: 180 RGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVVDLLAPYQRGGKIGLFGGAGV 235
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 53.2 bits (122), Expect = 1e-07
Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Frame = +3
Query: 195 VLEVS---GSKAVVQV-FEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 362
VLEVS G V + +GT G+ + TG + PV LGR+ N G+PID+
Sbjct: 124 VLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLN-TGAPITVPVGRATLGRIMNVLGEPIDE 182
Query: 363 GPPILAEDFLDIQGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGL 530
I E +L I +E++ TGI +D++ RG KI +F AG+
Sbjct: 183 RGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVVDLLAPYQRGGKIGLFGGAGV 238
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 53.2 bits (122), Expect = 1e-07
Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Frame = +3
Query: 195 VLEVS---GSKAVVQV-FEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 362
VLEVS G V + +GT G+ + TG + PV LGR+ N G+PID+
Sbjct: 121 VLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLN-TGAPITVPVGRATLGRIMNVLGEPIDE 179
Query: 363 GPPILAEDFLDIQGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGL 530
I E +L I +E++ TGI +D++ RG KI +F AG+
Sbjct: 180 RGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVVDLLAPYQRGGKIGLFGGAGV 235
>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
putative very strong similarity to SP|P23413 ATP
synthase alpha chain, mitochondrial (EC 3.6.3.14)
{Brassica campestris}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF00306: ATP synthase ab C terminal, PF02874:
ATP synthase alpha/beta family beta-barrel domain
Length = 777
Score = 48.8 bits (111), Expect = 3e-06
Identities = 31/105 (29%), Positives = 49/105 (46%)
Frame = +3
Query: 189 GQVLEVSGSKAVVQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGP 368
G L + + VF G + I + L + TG I+ P + MLGRV + G PID
Sbjct: 333 GMALNLENENVGIVVFGGDTAIK-EGDLVKRTGSIVDVPAGKAMLGRVVDAMGVPIDGKG 391
Query: 369 PILAEDFLDIQGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQK 503
+ + ++ + R E +QTG+ A+D + I RGQ+
Sbjct: 392 ALSDHEQRRVEVKAPGILERKSVHEPMQTGLKAVDSLVPIGRGQR 436
>At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit A
/ V-ATPase A subunit / vacuolar proton pump alpha
subunit / V-ATPase 69 kDa subunit identical to SP|O23654
Vacuolar ATP synthase catalytic subunit A (EC 3.6.3.14)
(V-ATPase A subunit) (Vacuolar proton pump alpha
subunit) (V-ATPase 69 kDa subunit) {Arabidopsis
thaliana}
Length = 623
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/93 (26%), Positives = 49/93 (52%)
Frame = +3
Query: 78 YKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQVFEGTSGID 257
Y V V+GP+V+ D + E+V++ D + G+++ + G A +QV+E T+G+
Sbjct: 21 YGYVRKVSGPVVVADGMAGAAMYELVRVG-HDNLI--GEIIRLEGDSATIQVYEETAGLT 77
Query: 258 AKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPI 356
+ + T L + +LG +F+G +P+
Sbjct: 78 VNDPVLR-THKPLSVELGPGILGNIFDGIQRPL 109
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 32.3 bits (70), Expect = 0.26
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -3
Query: 530 ETGGRENGNLLTTGDGVHHVNGGDTSLDHLLG 435
ET G + + GDGV NGGD S+++L G
Sbjct: 212 ETNGENSESTQEKGDGVEGSNGGDVSMENLQG 243
>At1g26330.1 68414.m03211 hypothetical protein
Length = 1196
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -1
Query: 343 EPLNTRPNMSSDTGVRRMSPVNSQRVFLASIPDVPSNTWTTAFEPL 206
E N+ N D +R MSP+NS R+ L P + +N+ + PL
Sbjct: 626 ESKNSCRNTGEDDSIRNMSPINSSRI-LELQPTLSTNSVSDRTNPL 670
>At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1
nuclear gene encoding mitochondrial protein - Homo
sapiens, EMBL:AF026849 contains Pfam profile: ATPase
family PF00004
Length = 470
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 372 ILAEDFLDIQGQPINPWSRIYPEEMIQTGISAIDVM-NSIARGQKIPIFSAAGL 530
ILA+++LD+ G +P + +T IS DV N +AR Q+I + + L
Sbjct: 390 ILAKNYLDLDGDDAHPLFSEIKALLEETKISPADVAENLMARNQQIDVDKSLNL 443
>At2g31780.1 68415.m03880 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam:PF01485 IBR
domain
Length = 537
Score = 29.1 bits (62), Expect = 2.4
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 295 CGHLYPKTCWVVYSTALV 348
CGH Y KTCW Y T +
Sbjct: 156 CGHPYCKTCWTGYITTKI 173
>At2g31770.1 68415.m03879 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam domain,
PF01485: IBR domain
Length = 543
Score = 29.1 bits (62), Expect = 2.4
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 295 CGHLYPKTCWVVYSTALV 348
CGH Y KTCW Y T +
Sbjct: 145 CGHPYCKTCWAGYITTKI 162
>At2g31760.1 68415.m03878 zinc finger protein-related contains low
similarity to zinc finger proteins and Pfam PF01485: IBR
domain
Length = 514
Score = 29.1 bits (62), Expect = 2.4
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 295 CGHLYPKTCWVVYSTALV 348
CGH Y KTCW Y T +
Sbjct: 138 CGHPYCKTCWTGYITTKI 155
>At2g30370.1 68415.m03696 allergen-related weak similarity to pollen
major allergen 2 protein [Juniperus ashei]
gi|9955725|emb|CAC05582
Length = 230
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 2 PLRCPSKQGACLGCVQGFHIPAPP 73
P RC SK G C C + H+P PP
Sbjct: 184 PPRCSSKCGRCTPC-KPVHVPVPP 206
>At5g21160.1 68418.m02528 La domain-containing protein /
proline-rich family protein contains proline-rich
extensin domains, INTERPRO:IPR002965, PF05383: La domain
Length = 826
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/44 (25%), Positives = 26/44 (59%)
Frame = +3
Query: 351 PIDKGPPILAEDFLDIQGQPINPWSRIYPEEMIQTGISAIDVMN 482
P+++GPPIL+ + LD++ + + + +E ++ I +M+
Sbjct: 263 PVNQGPPILSPEKLDLRDRVLKQVEYYFSDENLENDHYLISLMD 306
>At5g24970.1 68418.m02957 ABC1 family protein contains Pfam domain,
PF03109: ABC1 family
Length = 719
Score = 27.1 bits (57), Expect = 9.7
Identities = 12/39 (30%), Positives = 15/39 (38%)
Frame = +1
Query: 229 RCSRVRQVXXXXXXXXXXXXXFCGHLYPKTCWVVYSTAL 345
R SR +V GH P TCW++ S L
Sbjct: 675 RMSRKSEVHSYALDIVSALSTHFGHKVPHTCWILLSKLL 713
>At5g07530.1 68418.m00862 glycine-rich protein (GRP17) olesin;
glycine-rich protein 17 (GRP17) PMID:11431566; function:
pollen recognition (PMID:10655594)
Length = 543
Score = 27.1 bits (57), Expect = 9.7
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -3
Query: 596 GLTG-YLDKTGLSTDLGGDFVVGETGGRENGNLLTTGDGVHHVNGG 462
GL G + K G+S GG + G GG + +G G H + GG
Sbjct: 482 GLRGKFGKKRGMSGSEGG--MSGSEGGMSESGMSGSGGGKHKIGGG 525
>At3g09760.1 68416.m01156 zinc finger (C3HC4-type RING finger)
family protein ; contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 491
Score = 27.1 bits (57), Expect = 9.7
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +3
Query: 372 ILAEDFLDIQGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLP-HNEIA 548
IL + P+ P + PE G A+D++ S +G +PI + +P N+
Sbjct: 166 ILTPRLKKTESLPVTPIAHSNPEST--HGRFAVDLVTSTKKGPPLPIHRSRSVPAFNKDG 223
Query: 549 AQICRQAGLVKV 584
+Q RQ G+ +V
Sbjct: 224 SQ--RQLGVFRV 233
>At1g56190.1 68414.m06458 phosphoglycerate kinase, putative similar
to SP|P41758 Phosphoglycerate kinase, chloroplast
precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii};
contains Pfam profile PF00162: phosphoglycerate kinase
Length = 478
Score = 27.1 bits (57), Expect = 9.7
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +3
Query: 99 NGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQVFE-GTSGI 254
NGP+ + + KF K +E V KLA+ + G + G +V V + G +G+
Sbjct: 393 NGPMGVFEFEKFAKGTEAVANKLAE-LSKKGVTTIIGGGDSVAAVEKVGVAGV 444
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,652,165
Number of Sequences: 28952
Number of extensions: 328580
Number of successful extensions: 992
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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