Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_N06
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040645-8|AAB94982.1|  292|Caenorhabditis elegans Hypothetical ...    31   0.64 
Z81139-4|CAB03479.2|  358|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AL132862-26|CAB60561.1|  874|Caenorhabditis elegans Hypothetical...    28   6.0  

>AF040645-8|AAB94982.1|  292|Caenorhabditis elegans Hypothetical
           protein F52C6.4 protein.
          Length = 292

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 92  KPRYGNNSTICVDQSNFSKYNLKNSSAALL 3
           KP   +N  +C DQ   S YN+KN S   L
Sbjct: 124 KPHQPSNIVLCKDQRTISDYNIKNGSTLRL 153


>Z81139-4|CAB03479.2|  358|Caenorhabditis elegans Hypothetical
           protein W05H5.4 protein.
          Length = 358

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 97  NYFGYLKYQFLNSVHFNLSTTA*IPFTNAKVILEGFECIFW 219
           +Y+ + + Q   + H+ LS    IPF    V  E F C+F+
Sbjct: 10  SYYAFYEEQAKLNSHYKLSCHI-IPFVTLPVYAEAFYCVFY 49


>AL132862-26|CAB60561.1|  874|Caenorhabditis elegans Hypothetical
           protein Y73F8A.33 protein.
          Length = 874

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/22 (63%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = -3

Query: 86  RYGNNSTICVDQS-NFSKYNLK 24
           RYGN+  IC+D + N SKYNLK
Sbjct: 312 RYGNDG-ICIDDTHNPSKYNLK 332


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,621,644
Number of Sequences: 27780
Number of extensions: 243606
Number of successful extensions: 491
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)