Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_N06
         (610 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39020.1 68418.m04722 protein kinase family protein contains ...    33   0.11 
At2g19450.1 68415.m02272 diacylglycerol O-acyltransferase / acyl...    30   1.4  
At3g47900.1 68416.m05223 ubiquitin carboxyl-terminal hydrolase f...    28   4.2  
At2g22910.1 68415.m02720 GCN5-related N-acetyltransferase (GNAT)...    28   4.2  
At2g05645.1 68415.m00604 hypothetical protein                          28   5.6  
At5g24030.1 68418.m02823 C4-dicarboxylate transporter/malic acid...    27   7.4  
At2g02770.1 68415.m00220 COP1-interacting protein-related simila...    27   7.4  
At1g52615.1 68414.m05940 hypothetical protein                          27   9.7  

>At5g39020.1 68418.m04722 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 813

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 29/84 (34%), Positives = 39/84 (46%)
 Frame = -3

Query: 416 IDINLSYTTTSLKSTFDVCHSFFYIGYEYGG*K*RQLFNMGDNMKKYSVISSK*QIKTPR 237
           I + L +  T  KS FD  +SFF +  +  G    + FN  D+  + S+  S   IK   
Sbjct: 101 IFLRLYFYPTQYKSGFDAVNSFFSV--KVNGFTLLRNFN-ADSTVQASIPLSNSLIKEFI 157

Query: 236 ISVQNPQNIHSNPSKMTLALVKGI 165
           I V    N+   PSK  LA V GI
Sbjct: 158 IPVHQTLNLTFTPSKNLLAFVNGI 181


>At2g19450.1 68415.m02272 diacylglycerol O-acyltransferase / acyl
           CoA:diacylglycerol acyltransferase (DGAT) identical to
           gi:5050913, gi:6625553
          Length = 520

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 482 SIPDFKRVWNLFIYLTLFAHIYVQRRT*CLRYXLPVNLRVV 604
           S+ D+ R+WN+ ++  +  HIY      CLR  +P  L ++
Sbjct: 401 SVGDYWRMWNMPVHKWMVRHIYFP----CLRSKIPKTLAII 437


>At3g47900.1 68416.m05223 ubiquitin carboxyl-terminal hydrolase
           family protein contains Pfam profile PF00443: Ubiquitin
           carboxyl-terminal hydrolase
          Length = 367

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -3

Query: 452 IASSVISINS*KIDINLSYTTTSLKSTFDVCHSFFYIGYEY 330
           IA+++ ++N+ +IDIN+ Y     KST+ +     Y G  Y
Sbjct: 280 IAATLAALNT-EIDINIMYRGLDPKSTYSLVSVVCYYGQHY 319


>At2g22910.1 68415.m02720 GCN5-related N-acetyltransferase (GNAT)
           family protein / amino acid kinase family protein
           similar to SP|P08205 Amino-acid acetyltransferase (EC
           2.3.1.1) (N-acetylglutamate synthase) {Escherichia
           coli}; contains Pfam profiles PF00696: Amino acid kinase
           family, PF00583: acetyltransferase, GNAT family
          Length = 609

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 291 QHEKVFSYKQ*MTNQNPQNICTKPPEYTFKP 199
           Q  K F++ +     NP  +  KPP YT+ P
Sbjct: 22  QARKDFAFVEPSKKLNPNRVLIKPPVYTYSP 52


>At2g05645.1 68415.m00604 hypothetical protein
          Length = 204

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/57 (24%), Positives = 28/57 (49%)
 Frame = +2

Query: 224 FVQIFWGF*FVIYCL*LNTFSCCPPY*TVVVTFILHIHNLYKRMSDKRQMLISEMWW 394
           FV +FWG  F+++ +    F CC     VV   +L+  + ++ +S     +++   W
Sbjct: 22  FVDLFWGAFFLVFQVVERAFLCC----NVVSPLLLNRSHFFQDLSWSNPCILALACW 74


>At5g24030.1 68418.m02823 C4-dicarboxylate transporter/malic acid
           transport family protein weak similarity to SP|P25396
           Tellurite resistance protein tehA. {Escherichia coli};
           contains Pfam profile PF03595: C4-dicarboxylate
           transporter/malic acid transport protein
          Length = 635

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = +1

Query: 91  LFNYFGY-LKYQFLNSVHFNLSTTA*-IPFTNAKVILEGFECIFWGFCTDILGVLICHLL 264
           +F YF   ++  F   + F+LS  A   P T A +    +  +     T I+ V++C + 
Sbjct: 490 IFLYFSLAVRINFFRGIKFSLSWWAYTFPMTGAAIATIRYATVVKSTMTQIMCVVLCAIA 549

Query: 265 LITEYFFMLSPILNS 309
            +  +  +++ I+++
Sbjct: 550 TLVVFALLVTTIIHA 564


>At2g02770.1 68415.m00220 COP1-interacting protein-related similar
           to COP1-interacting protein 4 (CIP4) [Arabidopsis
           thaliana] GI:13160646, COP1-interacting protein 4.1
           (CIP4.1) [Arabidopsis thaliana] GI:13160650
          Length = 548

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 598 PKVDWEXIPKALSPPLYINV 539
           P+VDW+      SPPL+ N+
Sbjct: 414 PEVDWQSYKNCDSPPLHFNI 433


>At1g52615.1 68414.m05940 hypothetical protein
          Length = 318

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/21 (61%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = -3

Query: 401 SYTTTSLKSTFDVC-HSFFYI 342
           +YTT SLKSTF V  HSF ++
Sbjct: 14  TYTTISLKSTFAVIFHSFAFV 34


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,702,505
Number of Sequences: 28952
Number of extensions: 215613
Number of successful extensions: 655
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)