Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_N05
(690 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0922 + 20834195-20836603 31 1.1
08_01_0663 + 5721902-5723176,5724162-5724233,5724405-5724560,572... 29 2.6
04_03_0916 + 20794240-20794246,20794585-20796545 29 2.6
08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,440... 29 4.6
01_06_0996 + 33667663-33667900,33668019-33668091,33668785-336688... 29 4.6
02_05_0359 - 28269236-28269541,28270857-28270919,28271439-282714... 28 6.1
07_01_0476 - 3593555-3594253,3594684-3594850,3594866-3594964,359... 28 8.0
04_03_0913 + 20777859-20780309 28 8.0
03_02_0798 - 11321590-11321685,11321802-11321888,11321972-113220... 28 8.0
>04_03_0922 + 20834195-20836603
Length = 802
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 416 QPRFQCQSIRH*KPAKYSSSSELQHCRCRSGLHVQG-QDWCICDR 547
QP+ QC P + +EL C+C G ++ +DW + DR
Sbjct: 290 QPKVQCDVFAVCGPFTICNDNELGFCKCMKGFSIKSPKDWELDDR 334
>08_01_0663 +
5721902-5723176,5724162-5724233,5724405-5724560,
5724655-5724844,5725173-5725255
Length = 591
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 521 LEHVVHSGTDSVEVRNLRNIWQVFSGECFGTEIVVVVME 405
LE + HSG + +V L N W ++ F + VV+V E
Sbjct: 417 LELLAHSGEVNKQVPRLSNFWNMYFTHHFQVDTVVMVRE 455
>04_03_0916 + 20794240-20794246,20794585-20796545
Length = 655
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +2
Query: 416 QPRFQCQSIRH*KPAKYSSSSELQHCRCRSGLHVQG-QDWCICDR 547
QP+ QC P + +EL +C C G + +DW + DR
Sbjct: 135 QPKAQCDVYSICGPFTVCTDNELPNCNCIKGFTITSLEDWVLEDR 179
>08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,
44090-44322,45308-45412,45531-45705,46443-46658
Length = 977
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 54 LVGVNSRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTVNSDGTSGAMVKV 215
L G+ SR V P + ++ Y D+ EQW R R + L ++ + + G+ +V
Sbjct: 886 LTGLGSRIV---SPVFGLQSYSDKGEQWFQLR-RPDSKQLQIDGESSKGSRAEV 935
>01_06_0996 +
33667663-33667900,33668019-33668091,33668785-33668841,
33668970-33669067,33669482-33669637,33669744-33670366,
33670484-33670560,33671551-33671805,33671950-33672067,
33672174-33672345,33672434-33672975
Length = 802
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 52 FWSASTA-GTCSLKSLVTTLNNMRISRSSGPT 144
FW ST CS L+ LNN +SR +GP+
Sbjct: 40 FWPRSTKWALCSEVDLIGPLNNWTLSRLTGPS 71
>02_05_0359 -
28269236-28269541,28270857-28270919,28271439-28271459,
28271660-28271716,28271789-28271874,28271982-28272039,
28272176-28272311,28272799-28273073,28273564-28273602,
28274052-28274143,28274422-28274454,28275041-28275088,
28275191-28275323
Length = 448
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 159 AGAPWSWPTAPADPHIVQCSNQALQRARTG 70
AG PW+W +PA + +C A +R TG
Sbjct: 408 AGGPWTWRESPASRAMQKC--PACKRTHTG 435
>07_01_0476 -
3593555-3594253,3594684-3594850,3594866-3594964,
3595620-3595806,3595880-3595948,3596551-3596752,
3597124-3597362,3598374-3598637
Length = 641
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 143 LQGAPASGCTNCQLRRHLRCYGQGTYN 223
L G P G N + +LRCYG +Y+
Sbjct: 302 LNGVPGCGFLNHAINLYLRCYGSLSYH 328
>04_03_0913 + 20777859-20780309
Length = 816
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +2
Query: 416 QPRFQCQSIRH*KPAKYSSSSELQHCRCRSGLHVQG-QDWCICDR 547
QP+ C P +EL HC C G V +DW + DR
Sbjct: 288 QPKAPCDVYAICGPFTVCIDNELPHCNCIKGFTVTSLEDWELEDR 332
>03_02_0798 -
11321590-11321685,11321802-11321888,11321972-11322082,
11322169-11322515,11322570-11322612,11322669-11322749,
11323321-11323596,11325277-11325552
Length = 438
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 165 PLAGAPWSWPTAPADPHIVQCSNQALQR 82
PL+GAP P AP P + C AL +
Sbjct: 15 PLSGAPRRRPAAPTRPSALVCGTYALTK 42
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,953,023
Number of Sequences: 37544
Number of extensions: 475533
Number of successful extensions: 1266
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1266
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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