Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_N04
(438 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49097| Best HMM Match : F-box (HMM E-Value=1.6e-07) 30 0.96
SB_51289| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_28169| Best HMM Match : Paramyxo_C (HMM E-Value=8.7) 28 3.9
SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029) 27 5.1
SB_23345| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_86| Best HMM Match : PGK (HMM E-Value=0) 27 6.8
SB_26786| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_28078| Best HMM Match : SGS (HMM E-Value=1.5) 27 8.9
SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86) 27 8.9
SB_13560| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_34529| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
>SB_49097| Best HMM Match : F-box (HMM E-Value=1.6e-07)
Length = 190
Score = 29.9 bits (64), Expect = 0.96
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = +2
Query: 140 IKRVKYFFYSQLDNRVIQGIQALDNLHSKATINITAGGVGHTFV 271
I++++ + + V+Q + +++L+ K N+T +GH FV
Sbjct: 74 IRKIRILSLKKSLSFVVQSLSCIESLNLKGCYNVTDTSIGHAFV 117
>SB_51289| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 117 FNTTLYLSSRELNISSIHNSITELSRASKRWTTCIVKPQ 233
F+T + S L+++ I + IT ++ ++K W VK Q
Sbjct: 457 FSTEIQQSLESLHLTHIPDKITHVATSAKEWIKACVKDQ 495
>SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1067
Score = 27.9 bits (59), Expect = 3.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 173 LDNRVIQGIQALDNLHSKATINITAGGVGH 262
++NR I + A DN + TI+ T G VGH
Sbjct: 233 VENRAIVRLFANDNRQHELTISSTKGAVGH 262
>SB_28169| Best HMM Match : Paramyxo_C (HMM E-Value=8.7)
Length = 443
Score = 27.9 bits (59), Expect = 3.9
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Frame = +3
Query: 75 VILQTESNWPITLTFNTTLYLSSR----ELNISSIHNSITELSRASKRWTTCIVKPQSIS 242
++LQ P + TFN++ + SS N S+ ++S S + +S
Sbjct: 250 ILLQRTQEVPESSTFNSSTFNSSTFNSSTFNSSTFNSSTFNSSTVQRSTVQRSTVQRSTV 309
Query: 243 QREASVTHSSIF 278
QR S HSS+F
Sbjct: 310 QRSQSNVHSSVF 321
>SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029)
Length = 1769
Score = 27.5 bits (58), Expect = 5.1
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -3
Query: 232 CGFTMQVVQRLDALDNSVIEL*IEEIFNSLDE 137
CG + + L ALD+ +++L +E++ LDE
Sbjct: 1272 CGSAKEKIATLRALDDEILKLLVEDLEKFLDE 1303
>SB_23345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 903
Score = 27.1 bits (57), Expect = 6.8
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 229 HNQYHSGRRRSHIRQSSNEKREGERPR 309
H ++H ++RSH + SS E ER +
Sbjct: 394 HKEHHHKKKRSHSKTSSTTDEEKERKK 420
>SB_86| Best HMM Match : PGK (HMM E-Value=0)
Length = 445
Score = 27.1 bits (57), Expect = 6.8
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 182 RVIQGIQALDNLHSKATINITAGGVGHTFVNLRMKSERGRGL 307
+V IQ ++NL K I GG+ +TF + E G L
Sbjct: 214 KVADKIQLIENLLDKVNDMIIGGGMAYTFTKVLNNMEIGDSL 255
>SB_26786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 27.1 bits (57), Expect = 6.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 232 NQYHSGRRRSHIRQSSNEKREGER 303
N+Y+ GRRR + + N+ RE R
Sbjct: 27 NEYNEGRRRRRMERDDNDVRETRR 50
>SB_28078| Best HMM Match : SGS (HMM E-Value=1.5)
Length = 934
Score = 26.6 bits (56), Expect = 8.9
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +3
Query: 150 LNISSIHNSITELSRASKRWTTCIVK-PQSISQREASVTHSSIFE*KA 290
+N SS +S E S T I K P S S R VT S +FE K+
Sbjct: 752 INRSSTEHSSMEQPDGSSNTLTIIQKDPNSQSSRALHVTKSPVFESKS 799
>SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86)
Length = 1110
Score = 26.6 bits (56), Expect = 8.9
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +3
Query: 150 LNISSIHNSITELSRASKRWTTCIVK-PQSISQREASVTHSSIFE*KA 290
+N SS +S E S T I K P S S R VT S +FE K+
Sbjct: 608 INRSSTEHSSMEQPDGSSNTLTIIQKDPNSQSSRALHVTKSPVFESKS 655
>SB_13560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 26.6 bits (56), Expect = 8.9
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +3
Query: 75 VILQTESNWPITLTFNTT-LYLSSRELNISSIHNSITELSRASKRWTTC 218
V++Q+ W TL F +YL + +I I + +A K WT C
Sbjct: 11 VVVQSFKEW--TLCFKAKEMYLEDQNKECFAIRKGIFVVLQAFKEWTLC 57
>SB_34529| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 26.6 bits (56), Expect = 8.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 226 SHNQYHSGRRRSHIRQSSNEKREGERPRL*H 318
S + SGRRR+ S +RE RPR H
Sbjct: 112 SESGRESGRRRARHDTDSESERESRRPRARH 142
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,141,074
Number of Sequences: 59808
Number of extensions: 221404
Number of successful extensions: 676
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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