Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_N04
         (438 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC028132-1|AAH28132.1|  418|Homo sapiens F-box and leucine-rich ...    32   0.75 
AF231130-1|AAL56659.1| 1800|Homo sapiens NUP196 nucleoporin prot...    29   7.0  
AF071077-1|AAD22396.1| 1638|Homo sapiens Nup98-Nup96 precursor s...    29   7.0  
AF071076-1|AAD22395.1| 1712|Homo sapiens Nup98-Nup96 precursor p...    29   7.0  

>BC028132-1|AAH28132.1|  418|Homo sapiens F-box and leucine-rich
           repeat protein 14 protein.
          Length = 418

 Score = 32.3 bits (70), Expect = 0.75
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +2

Query: 140 IKRVKYFFYSQLDNRVIQGIQALDNLHSKATINITAGGVGHTFV 271
           I+RV+     +  + VIQG+  +++L+     N+T  G+GH FV
Sbjct: 70  IRRVQILSLRRSLSYVIQGMANIESLNLSGCYNLTDNGLGHAFV 113


>AF231130-1|AAL56659.1| 1800|Homo sapiens NUP196 nucleoporin protein.
          Length = 1800

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
 Frame = +3

Query: 84   QTESNWPITLTFNTTLYLSSREL----NISSIHNSITELSRASKRWTTCIVKPQSISQRE 251
            Q   +W +T T    L+   +EL    N    +  I E  RA  RW +C   PQ   + E
Sbjct: 1247 QIVKHWSLTWTLCEALWAHLKELDSQLNEPREYIQILERRRAFSRWLSCTATPQ--IEEE 1304

Query: 252  ASVTHSS 272
             S+T  +
Sbjct: 1305 VSLTQKN 1311


>AF071077-1|AAD22396.1| 1638|Homo sapiens Nup98-Nup96 precursor splice
            variant 1 protein.
          Length = 1638

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
 Frame = +3

Query: 84   QTESNWPITLTFNTTLYLSSREL----NISSIHNSITELSRASKRWTTCIVKPQSISQRE 251
            Q   +W +T T    L+   +EL    N    +  I E  RA  RW +C   PQ   + E
Sbjct: 1247 QIVKHWSLTWTLCEALWAHLKELDSQLNEPREYIQILERRRAFSRWLSCTATPQ--IEEE 1304

Query: 252  ASVTHSS 272
             S+T  +
Sbjct: 1305 VSLTQKN 1311


>AF071076-1|AAD22395.1| 1712|Homo sapiens Nup98-Nup96 precursor
            protein.
          Length = 1712

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
 Frame = +3

Query: 84   QTESNWPITLTFNTTLYLSSREL----NISSIHNSITELSRASKRWTTCIVKPQSISQRE 251
            Q   +W +T T    L+   +EL    N    +  I E  RA  RW +C   PQ   + E
Sbjct: 1247 QIVKHWSLTWTLCEALWAHLKELDSQLNEPREYIQILERRRAFSRWLSCTATPQ--IEEE 1304

Query: 252  ASVTHSS 272
             S+T  +
Sbjct: 1305 VSLTQKN 1311


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,407,820
Number of Sequences: 237096
Number of extensions: 1062791
Number of successful extensions: 2075
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2075
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3545165828
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)