Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_N04
         (438 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61780.1 68418.m07753 tudor domain-containing protein / nucle...    27   5.5  
At3g46840.1 68416.m05084 subtilase family protein contains simil...    27   5.5  
At1g05520.1 68414.m00565 transport protein, putative similar to ...    27   5.5  
At3g05390.1 68416.m00589 expressed protein ; expression supporte...    27   7.3  
At5g38590.2 68418.m04666 F-box family protein contains F-box dom...    26   9.7  
At1g01440.1 68414.m00059 extra-large G-protein-related weak simi...    26   9.7  

>At5g61780.1 68418.m07753 tudor domain-containing protein / nuclease
           family protein contains Pfam domains PF00567: Tudor
           domain and PF00565: Staphylococcal nuclease homologue
          Length = 985

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = +2

Query: 80  TANRVKLANHTDVQYNAIPFIKRVKYFFYSQLDNR----VIQGIQALDNL 217
           TA R+  +  + V+ ++ PF    KYF   ++ NR    V++G+   +NL
Sbjct: 259 TAQRLAASAASSVEVSSDPFAMEAKYFTELRVLNRDVRIVLEGVDKFNNL 308


>At3g46840.1 68416.m05084 subtilase family protein contains
           similarity to prepro-cucumisin GI:807698 from [Cucumis
           melo];
          Length = 738

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 167 SQLDNRVIQGIQALDNLHSKATINITAGGVGHTFVNL 277
           S+L  +V+  + +L +L+ K +  +TA G G    NL
Sbjct: 678 SKLKVKVVPAVLSLKSLYEKKSFTVTASGAGPKAENL 714


>At1g05520.1 68414.m00565 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 783

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +2

Query: 50  AEGSHLVIGNTANRVKLANHTDVQYNAIPFIKRVKYFFYSQLDNRVIQGIQALD 211
           +EG   ++    +   L +H D+  +A PF K+ +  FY  L N+++     LD
Sbjct: 315 SEGPGTIVSKDLSE-PLRSHKDLDKDAAPFYKKAEK-FYDALANQLVNQGHVLD 366


>At3g05390.1 68416.m00589 expressed protein ; expression supported
           by MPSS
          Length = 463

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 254 VGHTFVNLRMKSERGRGLDYDIGLYVADD 340
           +GH    ++M+ E+   +DYD+G Y  DD
Sbjct: 180 IGHACALMKMELEKY--MDYDVGAYCDDD 206


>At5g38590.2 68418.m04666 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 410

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 350 FIYNRPLHISLCHSRGLSPS 291
           F++N+  H++LC  RG SPS
Sbjct: 283 FVFNQLEHLTLCVCRGDSPS 302


>At1g01440.1 68414.m00059 extra-large G-protein-related weak
           similarity to extra-large G-protein  (AtXLG1)
           (GI:3201682) [Arabidopsis thaliana]
          Length = 664

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 226 SHNQYHSGRRRSHIRQSSNEKREGERPR 309
           S+N+Y++    S   + S   +EG RPR
Sbjct: 467 SYNEYYTNTEESEDSRISKASKEGRRPR 494


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,371,195
Number of Sequences: 28952
Number of extensions: 149216
Number of successful extensions: 383
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)